View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_high_19 (Length: 457)

Name: NF3114_high_19
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_high_19
NF3114_high_19
[»] chr7 (4 HSPs)
chr7 (98-439)||(42534539-42534887)
chr7 (8-97)||(6494744-6494833)
chr7 (5-98)||(38174620-38174713)
chr7 (5-98)||(45849487-45849581)
[»] chr5 (5 HSPs)
chr5 (5-98)||(15434412-15434505)
chr5 (5-99)||(900884-900978)
chr5 (5-97)||(2250327-2250419)
chr5 (39-98)||(30839719-30839778)
chr5 (5-72)||(8317381-8317448)
[»] chr3 (3 HSPs)
chr3 (5-97)||(26847736-26847828)
chr3 (6-98)||(2043731-2043823)
chr3 (5-98)||(40034727-40034820)
[»] chr2 (3 HSPs)
chr2 (5-98)||(33538175-33538268)
chr2 (229-264)||(5536090-5536125)
chr2 (5-72)||(40611590-40611657)
[»] chr6 (9 HSPs)
chr6 (5-98)||(29396444-29396537)
chr6 (5-93)||(22956984-22957072)
chr6 (5-93)||(23831320-23831408)
chr6 (5-97)||(18141383-18141475)
chr6 (14-93)||(21203302-21203381)
chr6 (5-91)||(22995981-22996065)
chr6 (5-91)||(23792335-23792419)
chr6 (5-68)||(7045191-7045254)
chr6 (42-97)||(9961242-9961297)
[»] chr1 (2 HSPs)
chr1 (5-99)||(9388559-9388653)
chr1 (5-100)||(10366563-10366658)
[»] chr4 (4 HSPs)
chr4 (5-68)||(33152512-33152575)
chr4 (5-96)||(3684733-3684824)
chr4 (39-97)||(2728256-2728314)
chr4 (40-72)||(48150577-48150609)
[»] chr8 (2 HSPs)
chr8 (51-99)||(24511974-24512022)
chr8 (14-93)||(37819877-37819956)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 98 - 439
Target Start/End: Complemental strand, 42534887 - 42534539
Alignment:
Q  98 ttgtgagtgagttctaatcatagttggaactaactctct--aactttactttctct------gacctctctctaagactttgcatcgccggcataccctt 189  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  42534887 ttgtgagtgagttctaatcatagt-ggaactaactctctctaactttactttctctttctctgacctctctctaagactttgcatcgccggcataccctt 42534789  T
Q  190 gtatccaaattcaaagcttccaagatgtagaagaggtagttggtggtgcgatgatggcccagccatccgcatcacctcctgcgccggttctctcggcgga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534788 gtatccaaattcaaagcttccaagatgtagaagaggtagttggtggtgcgatgatggcccagccatccgcatcacctcctgcgccggttctctcggcgga 42534689  T
Q  290 ggtccttgggtccggtggttgcggctcattttttcgacggcgccggcggcatggggcgtttggtagtgaaacgcttttgttctttggtgtggtgctctgt 389  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534688 ggtccttgggtccggtggttgcggctcatttttccgacggcgccggcggcatggggcgtttggtagtgaaacgcttttgttctttggtgtggtgctctgt 42534589  T
Q  390 tcatgtccgttttccgtggttccttgtcatggtgttgtctggtccttgct 439  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  42534588 tcatgtccgttttccgtggttccttgtcctggtgttgtccggtccttgct 42534539  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 6494833 - 6494744
Alignment:
Q  8 gagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctc 97  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||    
T  6494833 gagcacggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttattgattgtacaattttgttgttcacatatcattcctc 6494744  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 38174713 - 38174620
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    |||||||||||||||| |||||| ||||||||| |||||||||| ||| |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  38174713 gaggagcacagaaatcgaaatcaagcaaaatattattaaaaatatcaagtaagttattggttgtacaatttggttgttcacgtatcattcctct 38174620  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 45849487 - 45849581
Alignment:
Q  5 gaggagcacagaaatc-aaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    |||||||||| ||||  ||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||    
T  45849487 gaggagcacataaattgaaaatcaagcaaaatattattaaaaatagcaaataaattattggttgtacaatttggttgttcacgtatcattcctct 45849581  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 15434505 - 15434412
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15434505 gaggagcacagaaatcaaaatcaagcaaaatatcattaaaagtagcaaataagttgttggttgtacaatttggttgttcacatatcattcctct 15434412  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 900978 - 900884
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctctt 99  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  900978 gaggagcatggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttgttcacatatcattcctctt 900884  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 2250419 - 2250327
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctc 97  Q
    |||||| || ||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||| ||||||||||||||||||||    
T  2250419 gaggagtacggaaatcaaaatcatgcaaaatatcattaaaaataataaataaattgttgattgtacaatttgattcttcacatatcattcctc 2250327  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 30839778 - 30839719
Alignment:
Q  39 attaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    |||||||||||||| ||| |||||||| ||||||||| ||| ||||||||||||||||||    
T  30839778 attaaaaatagcaagtaaattgttggtcgtacaatttagttgttcacatatcattcctct 30839719  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 8317381 - 8317448
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaa 72  Q
    |||||||||  ||||||||||||   |||||||  | |||||||||||| ||||||||||||||||||    
T  8317381 gaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 8317448  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 26847736 - 26847828
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctc 97  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  26847736 gaggagcacggaaaacaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttgattgttcacatatcattcctc 26847828  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 2043823 - 2043731
Alignment:
Q  6 aggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    ||||||||| ||||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  2043823 aggagcacataaatcgaaatcaatcaaaatatcattaaagatagcaaataagttgttggttgtacaatttagttatttacatatcattcctct 2043731  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 40034820 - 40034727
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    ||||||||| ||||| ||||||||| ||||||| ||||||||||  ||||||||||||||||||||||||||  | ||||||||||||| ||||    
T  40034820 gaggagcacggaaattaaaatcatgtaaaatattattaaaaataataaataagttgttggttgtacaatttgaatgttcacatatcatttctct 40034727  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 33538268 - 33538175
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  33538268 gaggagtacggaaatcaaaatcatgcaaaatatcattaaaaatagtaaataagttgttggttgtacaatttgatttttcacatatcattcctct 33538175  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 5536125 - 5536090
Alignment:
Q  229 ttggtggtgcgatgatggcccagccatccgcatcac 264  Q
    |||||||||||| |||||||||||||||||||||||    
T  5536125 ttggtggtgcgacgatggcccagccatccgcatcac 5536090  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 40611657 - 40611590
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaa 72  Q
    |||||||||  ||||||||||||   |||||||  | |||||||||||| ||||||||||||||||||    
T  40611657 gaggagcacgcaaatcaaaatcaataaaaatatattaaaaaatagcaaaaaagttgttggttgtacaa 40611590  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 29396537 - 29396444
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctct 98  Q
    |||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  29396537 gaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggctgttcacatatcattcctct 29396444  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 22957072 - 22956984
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcatt 93  Q
    |||||||||| ||||| |||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  22957072 gaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 22956984  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 23831320 - 23831408
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcatt 93  Q
    |||||||||| ||||| |||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  23831320 gaggagcacataaatcgaaatcaagtaaaatattattaaaaatagcaagtaagttgttggttgtacaatttggttatttacatatcatt 23831408  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 18141475 - 18141383
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctc 97  Q
    |||||| ||| ||||| |||||| | ||||||| ||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||    
T  18141475 gaggagtacataaatcgaaatcaagtaaaatattattaaaaatagaaaataagttgctggttgtacgatttggttgttcacatatcattcctc 18141383  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 21203302 - 21203381
Alignment:
Q  14 agaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcatt 93  Q
    |||||||||||||| |||||| || |||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  21203302 agaaatcaaaatcaagcaaaacattattaaaaatatcaagtaagttgttgattgtacaatttggttgttcacatatcatt 21203381  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 22996065 - 22995981
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatca 91  Q
    |||||||||| ||||| |||||| ||||||||| ||||||||||||||  |||||||||||| |||||||||||| |||||||||||    
T  22996065 gaggagcacataaatcgaaatcaggcaaaatattattaaaaatagcaa--aagttgttggttatacaatttggttgttcacatatca 22995981  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 23792335 - 23792419
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatca 91  Q
    |||||||||| ||||| |||||| ||||||||| ||||||||||||||  |||||||||||| |||||||||||| |||||||||||    
T  23792335 gaggagcacataaatcgaaatcaggcaaaatattattaaaaatagcaa--aagttgttggttatacaatttggttgttcacatatca 23792419  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 7045191 - 7045254
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgt 68  Q
    ||||||||||||||||||| |||  ||||||||  |||||||||| |||| | |||||||||||    
T  7045191 gaggagcacagaaatcaaattcaaacaaaatatatttaaaaatagtaaatgaattgttggttgt 7045254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 9961242 - 9961297
Alignment:
Q  42 aaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctc 97  Q
    |||||||||||||||||||||||||||||||    | | |||||||||||||||||    
T  9961242 aaaaatagcaaataagttgttggttgtacaaacgagatgttcacatatcattcctc 9961297  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 9388653 - 9388559
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctctt 99  Q
    |||||||||| ||||| ||||||  |||||||||||||||||||| |||||||||||||||||||||||||  || |||||||||||||||||||    
T  9388653 gaggagcacataaatcgaaatcagacaaaatatcattaaaaatagtaaataagttgttggttgtacaatttaattgttcacatatcattcctctt 9388559  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 10366658 - 10366563
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctcttg 100  Q
    |||||||||| ||||| ||||||   |||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  10366658 gaggagcacataaatcgaaatcaaataaaatatcattaaaaataacaaataagttgttggttgtacaatttgattgttcacgtatcattcctcttg 10366563  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 33152512 - 33152575
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgt 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33152512 gaggagcacggaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgt 33152575  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 3684824 - 3684733
Alignment:
Q  5 gaggagcacagaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcct 96  Q
    |||||||||| ||||| ||||||  |||||||| |||||||||||||||||  ||||||||| |||||||| ||| ||||||||| ||||||    
T  3684824 gaggagcacaaaaatcgaaatcagacaaaatattattaaaaatagcaaatatattgttggttttacaatttagttgttcacatattattcct 3684733  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 2728314 - 2728256
Alignment:
Q  39 attaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcattcctc 97  Q
    |||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||    
T  2728314 attaaaaatagcaagtaagttgttggttgtataatttagttgttcacatatcattcctc 2728256  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 48150609 - 48150577
Alignment:
Q  40 ttaaaaatagcaaataagttgttggttgtacaa 72  Q
    |||||||||||||||||||||| ||||||||||    
T  48150609 ttaaaaatagcaaataagttgtcggttgtacaa 48150577  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 24512022 - 24511974
Alignment:
Q  51 aaataagttgttggttgtacaatttggttcttcacatatcattcctctt 99  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  24512022 aaataagttgttggttgtacaatttggttgttcagatatcattcctctt 24511974  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 37819877 - 37819956
Alignment:
Q  14 agaaatcaaaatcatgcaaaatatcattaaaaatagcaaataagttgttggttgtacaatttggttcttcacatatcatt 93  Q
    ||||||| ||||||   ||||||| |||||| ||||||||||| |||||||||||||||||| ||| |||| ||||||||    
T  37819877 agaaatcgaaatcagataaaatattattaaacatagcaaataaattgttggttgtacaatttagttgttcaaatatcatt 37819956  T

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