View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_2 (Length: 645)
Name: NF3114_high_2
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_2 |
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| [»] scaffold0810 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 54181305 - 54181678
Alignment:
| Q |
1 |
aacacctttcagtggtccctcagctgcctttctgaatgctgcattgacatcttcagctgaaatacccttcttcgcaacattcaccacaaggtcaacaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181305 |
aacacctttcagtggtccctcagctgcctttctgaatgctgcattgacatcttcggctgaaatacccttcttcgcaacattcaccacaaggtcaacaact |
54181404 |
T |
|
| Q |
101 |
gaaacattaggtgttggcacacgaagggcgattccattgagctttcccttgagctgtggcagcactagagagacagccttggctgctcctgtgctggtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181405 |
gaaacattaggtgttggcacacgaagggcgattccgttgagctttcccttgagctgtggcagcactagagagacagccttggctgctcctgtgctggtgg |
54181504 |
T |
|
| Q |
201 |
ggacaatgttcagtgctgcagccctggctcttctcaagtctctgtgtgaagcatccagaagcctctgcacaaacacaacttttagactttgtttggcttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54181505 |
ggacaatgttcagtgctgcagccctggctcttctcaagtctctgtgtgaagcatccagaagcctctgcacaaacacaacttttagactttgtttgacttg |
54181604 |
T |
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| Q |
301 |
atttgttttggcacaaaaaatcactttaaaattaaaaataagagctttagaaataaagctcaagttgtttgata |
374 |
Q |
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| T |
54181605 |
atttgttttggcactaaaaatcactttaaaattaaaaataagagctttagaaataaagctcaagttgtttgata |
54181678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 417 - 626
Target Start/End: Original strand, 54181716 - 54181925
Alignment:
| Q |
417 |
agagaataatagaatttgggttaaataataataaaacagatcaaattatcaaagttctcccacttgaaaagttactcatatatagtttctatatataaaa |
516 |
Q |
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| T |
54181716 |
agagaataatagaatttgggttaaataataataaaacagatcaaattatcaaagttctcccacttgaaaagttactcatatatagtttctatatataaaa |
54181815 |
T |
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| Q |
517 |
gaataaaaagataagctttttaacaacactgtttgacctatcttcttttaagtaagtcagaccaagccgagccttgttgtaacttcttatccattttcag |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181816 |
gaataaaaagataagctttttaacaacactgtttgacctatcttcttttaagtaagtcagaccaagccgagccttgttgtaacttcttatccattttcag |
54181915 |
T |
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| Q |
617 |
ttggaagatc |
626 |
Q |
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| T |
54181916 |
ttggatgatc |
54181925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 11423254 - 11423295
Alignment:
| Q |
333 |
taaaaataagagctttagaaataaagctcaagttgtttgata |
374 |
Q |
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| T |
11423254 |
taaaaattagagctttagaaataaagctaaagttgtttgata |
11423295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 32160654 - 32160608
Alignment:
| Q |
326 |
ttaaaattaaaaataagagctttagaaataaagctcaagttgtttga |
372 |
Q |
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||||||||||||||||||| |||| |||||||| | ||||||||||| |
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| T |
32160654 |
ttaaaattaaaaataagaggtttaaaaataaagttaaagttgtttga |
32160608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 4716 - 4671
Alignment:
| Q |
326 |
ttaaaattaaaaataagagctttagaaataaagctcaagttgtttg |
371 |
Q |
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| T |
4716 |
ttaaagttaaaaataagtgctttagaagtaaagctaaagttgtttg |
4671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 24725128 - 24725083
Alignment:
| Q |
326 |
ttaaaattaaaaataagagctttagaaataaagctcaagttgtttg |
371 |
Q |
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||||| ||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
24725128 |
ttaaagttaaaaataagtgctttagaattaaagctaaagttgtttg |
24725083 |
T |
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