View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_high_20 (Length: 456)

Name: NF3114_high_20
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_high_20
NF3114_high_20
[»] scaffold0063 (2 HSPs)
scaffold0063 (315-439)||(54280-54404)
scaffold0063 (1-122)||(54124-54245)
[»] chr8 (1 HSPs)
chr8 (235-277)||(33124587-33124629)
[»] scaffold0019 (1 HSPs)
scaffold0019 (235-278)||(66449-66492)
[»] chr7 (1 HSPs)
chr7 (239-278)||(22744650-22744689)
[»] chr6 (3 HSPs)
chr6 (240-278)||(7729505-7729543)
chr6 (239-269)||(11633972-11634002)
chr6 (239-268)||(11616235-11616264)
[»] chr3 (4 HSPs)
chr3 (239-269)||(40614484-40614514)
chr3 (239-268)||(26966550-26966579)
chr3 (242-278)||(49334927-49334963)
chr3 (242-278)||(49340116-49340152)
[»] chr2 (1 HSPs)
chr2 (236-277)||(15406338-15406379)


Alignment Details
Target: scaffold0063 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 315 - 439
Target Start/End: Original strand, 54280 - 54404
Alignment:
Q  315 ctgcctaaaaatacatattaagcttcattaatttaggattaagagtaagaaatgtaaatatatatttcaatcattgctgttttattacaggtttattaag 414  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  54280 ctgcctaaaaatacaatttaagcttcattaatttaggattaagagtaagaaatgtaaatatatatttcagtcagtgctgttttattacaggtttattaag 54379  T
Q  415 gtgtggaaaaagttgcagacttcgt 439  Q
    |||||||||||||||||||||||||    
T  54380 gtgtggaaaaagttgcagacttcgt 54404  T

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Target: scaffold0063; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 54124 - 54245
Alignment:
Q  1 tacaaggttaagtgattatattcagaagcatggtcattctaattggcgtcaactccccaagcttgcaggtacatgtttcattctgtatttaattaatatt 100  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  54124 tacaaggttaagtgattatattcagaaacatggtcattcaaattggcgtcaactccccaagcttgcaggtatatgtttcattcagtatttaattaatatt 54223  T
Q  101 catgattaatgttaatgatcaa 122  Q
     | |||||||||||||||||||    
T  54224 tacgattaatgttaatgatcaa 54245  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 33124629 - 33124587
Alignment:
Q  235 gaagttatatagtagttattgcattgaaaattgtgcaatcaat 277  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  33124629 gaagttatatagtagttattgcattgaaaattgtgtaatcaat 33124587  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 66449 - 66492
Alignment:
Q  235 gaagttatatagtagttattgcattgaaaattgtgcaatcaatc 278  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  66449 gaagttatataatagttattgcattgaaaattgtgtaattaatc 66492  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 22744650 - 22744689
Alignment:
Q  239 ttatatagtagttattgcattgaaaattgtgcaatcaatc 278  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  22744650 ttatatagtagttattgcattaaaaattgtgtaatcaatc 22744689  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 7729543 - 7729505
Alignment:
Q  240 tatatagtagttattgcattgaaaattgtgcaatcaatc 278  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  7729543 tatatagttgttattgcattgaaaattgtgtaatcaatc 7729505  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 269
Target Start/End: Original strand, 11633972 - 11634002
Alignment:
Q  239 ttatatagtagttattgcattgaaaattgtg 269  Q
    |||||||||||||||||||||||||||||||    
T  11633972 ttatatagtagttattgcattgaaaattgtg 11634002  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 11616264 - 11616235
Alignment:
Q  239 ttatatagtagttattgcattgaaaattgt 268  Q
    ||||||||||||||||||||||||||||||    
T  11616264 ttatatagtagttattgcattgaaaattgt 11616235  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 269
Target Start/End: Original strand, 40614484 - 40614514
Alignment:
Q  239 ttatatagtagttattgcattgaaaattgtg 269  Q
    |||||||||||||||||||||||||||||||    
T  40614484 ttatatagtagttattgcattgaaaattgtg 40614514  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 26966550 - 26966579
Alignment:
Q  239 ttatatagtagttattgcattgaaaattgt 268  Q
    ||||||||||||||||||||||||||||||    
T  26966550 ttatatagtagttattgcattgaaaattgt 26966579  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 49334927 - 49334963
Alignment:
Q  242 tatagtagttattgcattgaaaattgtgcaatcaatc 278  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  49334927 tatagtagttattgcattgaaaattgtgtaattaatc 49334963  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 49340116 - 49340152
Alignment:
Q  242 tatagtagttattgcattgaaaattgtgcaatcaatc 278  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  49340116 tatagtagttattgcattgaaaattgtgtaattaatc 49340152  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 15406379 - 15406338
Alignment:
Q  236 aagttatatagtagttattgcattgaaaattgtgcaatcaat 277  Q
    ||||||||||||| ||||||||||||||||| || |||||||    
T  15406379 aagttatatagtaattattgcattgaaaattatgtaatcaat 15406338  T

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