View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_23 (Length: 440)
Name: NF3114_high_23
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 27943597 - 27943180
Alignment:
| Q |
13 |
aacctgtgcctccagttacacaaactcttccttttccttcagccatttggacactctttttctgtgattgatagtgtttgtttccttttctttgtgttgt |
112 |
Q |
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| T |
27943597 |
aacctgtacctccagtcacacaaactcttccttttccttcagccatttggacactctttttctgtgattgatagtgtttgtttccttttctttgtgttgt |
27943498 |
T |
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| Q |
113 |
ccttaacttctactattaactatatttatacata--catt---gctatac--tcacaatataatattggttggttgctttggccattgcatcattattgg |
205 |
Q |
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| T |
27943497 |
ccttaacttctactattaact-tatttatacatatacatataagatatacactcacaatataatattggttggttgctttggccattgcatcattattgg |
27943399 |
T |
|
| Q |
206 |
actcttttgagtcaaacatttttgctgaataaacgtcaccgatgttaattcggtaaattaattcataagagttttaacttgaagtggtaggtacttcnnn |
305 |
Q |
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| T |
27943398 |
actcttttgagtcaaacatttttgctgaataaacgtcaccgatgttaattcggtacattaattcataagagttttaacttgaagtggtaggtacttc--a |
27943301 |
T |
|
| Q |
306 |
nnnnnnnncttgagttggtaggttacatccaag--aaaataagtacatttattttctctatgcttttagctcttgacattatgctaacatcttaatcatt |
403 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27943300 |
aaaaaaaacttgagttggtaggttacatccaagaaaaaataagtacatttattttctctatgcttttagctcttgacattatgctaacatcttaatcatt |
27943201 |
T |
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| Q |
404 |
gaaaattaagaaattgaaaac |
424 |
Q |
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| T |
27943200 |
gaaaattaagaaattgaaaac |
27943180 |
T |
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