View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_24 (Length: 437)
Name: NF3114_high_24
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Original strand, 54958056 - 54958460
Alignment:
| Q |
22 |
ttgttgttgtcatttgtacagggaaaggtggcgttggtgacaggaggtgactcaggtataggaagagcagtgtgtctaatatttgcaaaagagggtgcaa |
121 |
Q |
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| T |
54958056 |
ttgttattgtcatttgtacagggaaaggtggcgttggtgacaggaggtgactcaggtataggaagagcagtgtgtctaatatttgcaaaagagggtgcaa |
54958155 |
T |
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| Q |
122 |
cagtggcctttacatacgtgaaaggtgttgaggatagggataaggatgatactctgaagatgttgctagaagccaagacaaatgatgcacaagaaccatt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54958156 |
cagtggcctttacatacgtgaaaggtgttgaggatagggacaaggatgatactctgaagatgttgctagaagccaagacaagtgatgcacaagaaccatt |
54958255 |
T |
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| Q |
222 |
agctattgcagctgatattggatatgatgagaattgcaaacaggttgtggaacttgttgtcaaagagtatgga---cgcattgatgttcttgtcaacaat |
318 |
Q |
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| T |
54958256 |
agcaattgctgctgatattggatatgatgagaattgtaaacaggttgtggaacttgttgtaaaagaatatggaagcagcattgatgttcttgtcaacaat |
54958355 |
T |
|
| Q |
319 |
gcagctgaacaacacctcaaaaactcaatagaggaaatcactgaacaacagcttgaaagagttttcaggaccaacatcttttcacacttcttcttggtta |
418 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54958356 |
gcagctgaacaacacctcagaaactcaatagaggaaatcactgaacaacagcttgaaagagttttcaggaccaacatcttttcacacttcttcttggtca |
54958455 |
T |
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| Q |
419 |
ggtat |
423 |
Q |
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||||| |
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| T |
54958456 |
ggtat |
54958460 |
T |
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