View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_high_31 (Length: 368)

Name: NF3114_high_31
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_high_31
NF3114_high_31
[»] chr3 (4 HSPs)
chr3 (109-362)||(51855844-51856097)
chr3 (17-113)||(51855460-51855556)
chr3 (17-113)||(35042925-35043021)
chr3 (109-162)||(35042588-35042641)
[»] chr7 (3 HSPs)
chr7 (109-362)||(8945031-8945283)
chr7 (44-113)||(8944674-8944743)
chr7 (24-102)||(1869566-1869644)
[»] chr4 (1 HSPs)
chr4 (280-338)||(24269829-24269886)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 109 - 362
Target Start/End: Original strand, 51855844 - 51856097
Alignment:
Q  109 agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51855844 agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaaggctattctccaataacataattctaacattttatattcaagt 51855943  T
Q  209 aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca 308  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855944 aaagttaagtcaacatgaacaaacattttaaaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca 51856043  T
Q  309 agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcatctcac 362  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  51856044 agtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcttctcac 51856097  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 51855460 - 51855556
Alignment:
Q  17 acattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51855460 acattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac 51855556  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 35043021 - 35042925
Alignment:
Q  17 acattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35043021 acattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgccatccagaagcagagcaaacaattagtac 35042925  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 35042641 - 35042588
Alignment:
Q  109 agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggcc 162  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  35042641 agtacacaaatacacaaatctggcagatgaacttctcctaccagccttagggcc 35042588  T

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Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 109 - 362
Target Start/End: Original strand, 8945031 - 8945283
Alignment:
Q  109 agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8945031 agtacacaaatacacaaatctggcagatgaacttcccttaccagccttaggggcaaaggctattctccaataacataattctaacattttatattcaagt 8945130  T
Q  209 aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca 308  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8945131 aaagttaagtcaacatgaacaaacattt-taaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca 8945229  T
Q  309 agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcatctcac 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8945230 agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcac 8945283  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 8944674 - 8944743
Alignment:
Q  44 tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8944674 tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac 8944743  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 1869566 - 1869644
Alignment:
Q  24 aaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaa 102  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||| ||| ||||||||    
T  1869566 aaggttgatagccatttcattttgaccttgagcacaaaaaagttttgcttcttcaatctgccatccggaaccagagcaa 1869644  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 24269829 - 24269886
Alignment:
Q  280 aaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc 338  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| ||||    
T  24269829 aaacctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc 24269886  T

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