View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_34 (Length: 367)
Name: NF3114_high_34
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 45861024 - 45861361
Alignment:
| Q |
9 |
agcacagaactgcataatagacattttttctatcaaaacgagttatattaccaaaagctatacaaatatagagaagagtttgaaattacctcatctccaa |
108 |
Q |
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| T |
45861024 |
agcacggaactgcataatagacattttttctatcaaaacgagttctattaccaaaagctatacaaatatagagaagagtttgaaattacctcatctccaa |
45861123 |
T |
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| Q |
109 |
aagggcggtcaatatttgaagatatctttgatgaaaaagcagccaggagtaatctcaatgctaaagcagtttgaccacctgatatttagatcataagaca |
208 |
Q |
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| T |
45861124 |
aagggcggtcaatatttgaagatatctttgatgaaaaagcagccaggagtaatctcaatgctaaagcagtttgaccacctgatatttagatcataagaca |
45861223 |
T |
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| Q |
209 |
ataaacatgtttctcttacagatattaaatagacatctcaaaaccaactcatggtacaaaataaatctgtttcacccttatcttgatttagattaagtgg |
308 |
Q |
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| T |
45861224 |
ataaacatgtttctcctacagatattaaatagacatctcaaaaccaactcatggtacaaaataaatctgtttcacccttatcttgatttagattaagtgg |
45861323 |
T |
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| Q |
309 |
agtttaatgtgtctttaaggtacaaggattcccctaag |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45861324 |
agtttaatgtgtctttaaggtacaaggattcccctaag |
45861361 |
T |
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