View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_high_40 (Length: 335)
Name: NF3114_high_40
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 8944308 - 8943995
Alignment:
| Q |
1 |
gtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944308 |
gtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgt |
8944209 |
T |
|
| Q |
101 |
tgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattca |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944208 |
tgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattca |
8944109 |
T |
|
| Q |
201 |
gtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtga |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8944108 |
gtttcatagttggataatctcaagtactattgctagatcaatatgaaggagcaatactctgcaacatttagtcaaagcgaaagaaattgaatatgggtga |
8944009 |
T |
|
| Q |
301 |
tatgctttgacagt |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8944008 |
tatgctttgacagt |
8943995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26887351 - 26887668
Alignment:
| Q |
1 |
gtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887351 |
gtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacactacactacactagcttttgt |
26887450 |
T |
|
| Q |
101 |
tgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattca |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
26887451 |
tgctgttgttaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttaaaaaaccttcaagaactaaatgcctaattca |
26887550 |
T |
|
| Q |
201 |
gtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887551 |
gtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtga |
26887650 |
T |
|
| Q |
301 |
tatgctttgacagttgtg |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26887651 |
tatgctttgacagttgtg |
26887668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 26887667 - 26887714
Alignment:
| Q |
270 |
tgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagttgtg |
318 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
26887667 |
tgtcaaagcgaaagaa-ttgaatatggatgatatgctttgacagttgtg |
26887714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 51855073 - 51854760
Alignment:
| Q |
1 |
gtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51855073 |
gtagctaagtttatatcaacactagctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccctacactagcttttgt |
51854974 |
T |
|
| Q |
101 |
tgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattca |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854973 |
tgctgttgttaatcaaattggtggtgatggccaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattca |
51854874 |
T |
|
| Q |
201 |
gtttcatagttggataagctcaagtactattgctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854873 |
gtttcatagttggataagctcaagtactatttctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtga |
51854774 |
T |
|
| Q |
301 |
tatgctttgacagt |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51854773 |
tatgctttgacagt |
51854760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 21989049 - 21988833
Alignment:
| Q |
1 |
gtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| | |||||||| ||||| |||||| ||||||||||| |||||||| |||||| |||| || |
|
|
| T |
21989049 |
gtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagcggacactacg--acactaactttagt |
21988952 |
T |
|
| Q |
101 |
tgctgttgtcaatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattca |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
21988951 |
tgctgttgttaatcaaactggtggtgatggctaagccatttgcctaattcaattttaatttcatagttagaaaaccatcgagagctaaatgcctaattca |
21988852 |
T |
|
| Q |
201 |
gtttcatagttggataagc |
219 |
Q |
| |
|
||| ||||||||| |||| |
|
|
| T |
21988851 |
attttatagttggaaaagc |
21988833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University