View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_54 (Length: 293)
Name: NF3114_high_54
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2150851 - 2150577
Alignment:
| Q |
1 |
tctttactttttgtgacattaagcaagttgtctttcatgcttctcagcttacttatttagctaccttgacgacgacgttatttctacgaaccaagatgta |
100 |
Q |
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| T |
2150851 |
tctttactttttgtgacattaagcaagttgtctttcatgcttctcagcttacttatttagctaccttgacgacgacgttatttctgcgaaccaagatgta |
2150752 |
T |
|
| Q |
101 |
tcattctaccattgaggatgcacaaacatacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactatc |
200 |
Q |
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| T |
2150751 |
tcattctaccattgaggatgcacaaacatacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactatc |
2150652 |
T |
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| Q |
201 |
atgaaacttcctatcttttacaagcaaagagatcttcttttctatccttcatgggcttattctcttccaccatgg |
275 |
Q |
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| T |
2150651 |
atgaaacttcctatcttttacaagcaaagagatcttcttttctatccttcatgggcttattctcttccaccatgg |
2150577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 2163147 - 2163001
Alignment:
| Q |
129 |
tacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagcaaa |
228 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| | |||||||||||| ||||||||||||||| |
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| T |
2163147 |
tacatgggagcactatttttcacagtcacagtagcaatgttcaatggaatatcagaactaaatatgacacttatgaaacttcctgtcttttacaagcaaa |
2163048 |
T |
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| Q |
229 |
gagatcttcttttctatccttcatgggcttattctcttccaccatgg |
275 |
Q |
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| T |
2163047 |
gagatcttcttttctatccttcatgggcttattctcttccaccatgg |
2163001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 8537126 - 8536994
Alignment:
| Q |
129 |
tacatgggagcactatttttcactgtcaca---gtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagc |
225 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||| | ||||||||| || |||||||||||| |
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| T |
8537126 |
tacatgggagcactatttttcacactcacatgagtagcaatgttcaatggaatatcagaattgaatacgacacttatgaaactttctgtcttttacaagc |
8537027 |
T |
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| Q |
226 |
aaagagatcttcttttctatccttcatgggctt |
258 |
Q |
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| T |
8537026 |
aaagagatcttctcttctatccttcacgggctt |
8536994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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