View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_56 (Length: 286)
Name: NF3114_high_56
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 26579394 - 26579131
Alignment:
| Q |
17 |
acaaagtagaatgattagttgtacacaatattttattgaaaataacaatcataagttnnnnnnnnnnnnnnnnnngtcagtttatacacaaagaaattgg |
116 |
Q |
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| T |
26579394 |
acaaagtagaatgattagttgcacacaatattttattgaaaataacaatcataagttaaaaaaaaaaaaaaaaaa-tcagtttatacacaaagaaattgg |
26579296 |
T |
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| Q |
117 |
tcattgaagttttctacataaacttccaccaagttttttgaaaaatagttgaagtattttctcatgtgaatcatgattataacttgtaggttttctattt |
216 |
Q |
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| T |
26579295 |
taattgaagttttccacataaacttccaccaagttttttgaaaaatagttgaagtattttctcatgtgaatcatgattataacttgtaggttttctattt |
26579196 |
T |
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| Q |
217 |
gtataacaaaacttggttttatcgtgagataaatcaagggtttttctattaatgtctctgctcct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26579195 |
gtataacaaaacttggttttatcgtgagataaatcaagggtttttctattaatgtctcttctcct |
26579131 |
T |
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