View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_high_59 (Length: 279)

Name: NF3114_high_59
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_high_59
NF3114_high_59
[»] chr2 (12 HSPs)
chr2 (2-117)||(35681921-35682036)
chr2 (30-112)||(27952637-27952719)
chr2 (2-112)||(31636002-31636112)
chr2 (2-89)||(280297-280384)
chr2 (47-117)||(2165636-2165706)
chr2 (2-101)||(22011099-22011198)
chr2 (39-113)||(23457389-23457462)
chr2 (54-108)||(33053187-33053241)
chr2 (223-268)||(35682142-35682187)
chr2 (36-112)||(36648624-36648700)
chr2 (13-115)||(32162225-32162326)
chr2 (36-112)||(36614845-36614921)
[»] chr5 (5 HSPs)
chr5 (2-117)||(21845197-21845312)
chr5 (5-108)||(18252138-18252241)
chr5 (47-89)||(19677630-19677672)
chr5 (83-117)||(21849278-21849312)
chr5 (83-117)||(21857192-21857226)
[»] chr7 (8 HSPs)
chr7 (2-112)||(4303124-4303234)
chr7 (3-108)||(11001090-11001195)
chr7 (2-91)||(1369531-1369620)
chr7 (35-111)||(1786424-1786500)
chr7 (35-112)||(13882995-13883071)
chr7 (35-111)||(1217473-1217548)
chr7 (2-108)||(8915437-8915542)
chr7 (2-117)||(11228437-11228551)
[»] chr1 (8 HSPs)
chr1 (3-116)||(10926912-10927026)
chr1 (35-117)||(10927852-10927934)
chr1 (4-112)||(13441901-13442007)
chr1 (4-117)||(23988942-23989055)
chr1 (30-102)||(8966022-8966094)
chr1 (37-112)||(31915287-31915365)
chr1 (37-113)||(40805609-40805685)
chr1 (37-100)||(31522584-31522647)
[»] chr8 (8 HSPs)
chr8 (2-117)||(23573251-23573365)
chr8 (47-117)||(22922157-22922227)
chr8 (39-112)||(26377776-26377849)
chr8 (37-112)||(22512360-22512435)
chr8 (2-115)||(2688888-2688999)
chr8 (48-112)||(2188719-2188783)
chr8 (38-89)||(24577813-24577864)
chr8 (61-104)||(37193064-37193107)
[»] chr3 (6 HSPs)
chr3 (42-112)||(3064051-3064121)
chr3 (2-112)||(365863-365972)
chr3 (36-100)||(8536655-8536719)
chr3 (36-112)||(2472969-2473045)
chr3 (76-112)||(43304270-43304306)
chr3 (49-94)||(24516698-24516743)
[»] chr6 (15 HSPs)
chr6 (2-117)||(18203152-18203265)
chr6 (47-117)||(30049629-30049699)
chr6 (47-117)||(30051916-30051986)
chr6 (2-115)||(12881740-12881852)
chr6 (47-114)||(3541959-3542026)
chr6 (2-112)||(22888970-22889080)
chr6 (2-112)||(22873527-22873637)
chr6 (2-112)||(22910513-22910623)
chr6 (2-108)||(34374051-34374157)
chr6 (2-117)||(12778664-12778777)
chr6 (67-112)||(11194398-11194443)
chr6 (35-91)||(8047661-8047717)
chr6 (81-117)||(18726879-18726915)
chr6 (37-101)||(32361109-32361173)
chr6 (48-86)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (2-117)||(22716329-22716444)
chr4 (2-117)||(22988773-22988888)
chr4 (47-117)||(13085398-13085471)
chr4 (56-114)||(6659640-6659697)
chr4 (2-115)||(10494639-10494752)
chr4 (2-89)||(7635005-7635092)
chr4 (35-97)||(9260313-9260375)
[»] scaffold0110 (1 HSPs)
scaffold0110 (47-117)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (2-112)||(10366-10476)
scaffold0054 (36-100)||(49063-49127)
scaffold0054 (56-95)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (2-108)||(145449-145555)
scaffold0024 (35-99)||(144177-144243)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 35681921 - 35682036
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35681921 gttcattgaaggagtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 35682020  T
Q  102 cttagtaattttatag 117  Q
    ||||||||||||||||    
T  35682021 cttagtaattttatag 35682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 27952719 - 27952637
Alignment:
Q  30 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  27952719 aagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataattt 27952637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 31636002 - 31636112
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| |||||||||||||||| | || | |||||||  || ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  31636002 gttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggaggagactgatgtaggagggtttt 31636101  T
Q  102 cttagtaattt 112  Q
     ||||||||||    
T  31636102 attagtaattt 31636112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 280384 - 280297
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 89  Q
    |||||||| |||| |||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  280384 gttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatg 280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 2165636 - 2165706
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  2165636 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattttatag 2165706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 22011099 - 22011198
Alignment:
Q  2 gttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 100  Q
    |||||| |||||||||||||| ||| |||||   |||||| |||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  22011099 gttcatcgaaggagtcaacatacatgagaaatt-ctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggagggttt 22011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 23457389 - 23457462
Alignment:
Q  39 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 113  Q
    ||||||| |||||||||||   |||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtagga-ggttttcttagtaatttt 23457462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 33053187 - 33053241
Alignment:
Q  54 cggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 108  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  33053187 cggggtcgagttcttcagaggtggaggagactgatgtagaagggtttccttagta 33053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 35682142 - 35682187
Alignment:
Q  223 agaacattatagtatttatttcagttggagcctcagtttcattcat 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35682142 agaacattatagtatttatttcagtttgagcctcagtttcattcat 35682187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 36648624 - 36648700
Alignment:
Q  36 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    ||||||||||  |||||| || ||||||||||||| || ||||||||||| ||| |||||||||| |||||||||||    
T  36648624 tttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggagggtttccttagtaattt 36648700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 32162326 - 32162225
Alignment:
Q  13 gagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||||||||||||| | |||| ||||||||||| ||||||||  ||| ||||| ||||||| ||||||||||| ||| | |||| ||| ||||| |||||    
T  32162326 gagtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgtaagaggatttccttag-aattt 32162228  T
Q  113 tat 115  Q
    |||    
T  32162227 tat 32162225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 36614845 - 36614921
Alignment:
Q  36 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    ||||||||||  | ||||||| ||||||||||||| || ||||||||||| | | |||||||||| |||||||||||    
T  36614845 tttatcagaacaaaaactcggagtcgagttcttcatagatggaggagactcacgtaggagggtttccttagtaattt 36614921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 21845312 - 21845197
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| |||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  21845312 gttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatgcaagagggtttt 21845213  T
Q  102 cttagtaattttatag 117  Q
    ||||||||||||||||    
T  21845212 cttagtaattttatag 21845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 18252138 - 18252241
Alignment:
Q  5 cattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttctt 104  Q
    ||||| ||||||| |||||||| ||||||  ||||||| || |||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||    
T  18252138 cattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagggtttcctt 18252237  T
Q  105 agta 108  Q
    ||||    
T  18252238 agta 18252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 19677672 - 19677630
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677672 gagaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 21849312 - 21849278
Alignment:
Q  83 actgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||| |||||||||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatag 21849278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  83 actgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatag 21857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 4303124 - 4303234
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||| |||||||| | |||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  4303124 gttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggtttt 4303223  T
Q  102 cttagtaattt 112  Q
     ||||||||||    
T  4303224 attagtaattt 4303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 11001195 - 11001090
Alignment:
Q  3 ttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 102  Q
    ||||||| |||||| ||||||||| | |||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  11001195 ttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggagggtttcc 11001096  T
Q  103 ttagta 108  Q
    ||||||    
T  11001095 ttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 1369531 - 1369620
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 91  Q
    |||||||| |||||||||||| ||| | |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||||    
T  1369531 gttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagactcatgca 1369620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 1786424 - 1786500
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 111  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1786424 ctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 13883071 - 13882995
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  13883071 ctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgatgcaggagggttttattagtaattt 13882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 1217548 - 1217473
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 111  Q
    |||||||| || | ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  1217548 ctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaatt 1217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 8915542 - 8915437
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||| | |||||||||||||||| | | ||  ||||| |||| ||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||     
T  8915542 gttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagggtttc 8915444  T
Q  102 cttagta 108  Q
    |||||||    
T  8915443 cttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 11228437 - 11228551
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||  |||||||| ||||||| | |||  |||||| |||| |||||||||||| | ||||||| ||||| |||| ||||||||| |||| |||||     
T  11228437 gttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtaggatggtttc 11228535  T
Q  102 cttagtaattttatag 117  Q
    | ||||||||||||||    
T  11228536 catagtaattttatag 11228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 10926912 - 10927026
Alignment:
Q  3 ttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 102  Q
    ||||||| |||||||||||||||| | |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||    
T  10926912 ttcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggatgattttc 10927011  T
Q  103 -ttagtaattttata 116  Q
     ||||||||||||||    
T  10927012 attagtaattttata 10927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 10927852 - 10927934
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 117  Q
    |||||| |||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||    
T  10927852 ctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagggtttccttagtaattttatag 10927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 13442007 - 13441901
Alignment:
Q  4 tcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttct 103  Q
    |||||| |||||||||||||||| | |||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||||||||||| |||||||| |    
T  13442007 tcattggaggagtcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaagggttttgt 13441910  T
Q  104 tagtaattt 112  Q
    |||||||||    
T  13441909 tagtaattt 13441901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 23988942 - 23989055
Alignment:
Q  4 tcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttct 103  Q
    ||||||||||||| ||||||||  | |||| ||||| || || ||||||||  |||||||||||||||||||| |||||||| ||| |||||||||| ||    
T  23988942 tcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgtaggagggtttcct 23989041  T
Q  104 tagtaattttatag 117  Q
    ||||||||| ||||    
T  23989042 tagtaatttcatag 23989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 8966094 - 8966022
Alignment:
Q  30 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 102  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  8966094 aagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtaggaaggttttc 8966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 31915287 - 31915365
Alignment:
Q  37 ttatcagaaagagaactcggggtcgagttcttcagaggt---ggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||| |||| ||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||| ||||||||||    
T  31915287 ttattagaacgagaactcggggttgagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaattt 31915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 40805609 - 40805685
Alignment:
Q  37 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 113  Q
    |||||||||  ||||||||||||||| ||||| | |||||||||||||||||| ||||  |||| |||| |||||||    
T  40805609 ttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagtttccttattaatttt 40805685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 31522584 - 31522647
Alignment:
Q  37 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 100  Q
    ||||||||| |||||||||  ||||||||||||||||||||| | | |||||| ||||||||||    
T  31522584 ttatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggagggttt 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 23573251 - 23573365
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| |||||||||||||||| | |||| |||||||| || || ||||| |||||||||||||||||||||||||||||| ||| || |||| |||    
T  23573251 gttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg-ttt 23573349  T
Q  102 cttagtaattttatag 117  Q
    ||||||||||||||||    
T  23573350 cttagtaattttatag 23573365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 22922227 - 22922157
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  22922227 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 26377776 - 26377849
Alignment:
Q  39 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaattt 26377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 22512435 - 22512360
Alignment:
Q  37 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  22512435 ttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 22512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 2688888 - 2688999
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| |||||||||||||||| | || | ||  || |||| ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||     
T  2688888 gttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggagggtttc 2688985  T
Q  102 cttagtaattttat 115  Q
     |||||| ||||||    
T  2688986 tttagtatttttat 2688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 2188783 - 2188719
Alignment:
Q  48 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    ||||||||| ||||||||||||| || ||||||||||| | | |||| ||||| |||||||||||    
T  2188783 agaactcggagtcgagttcttcatagatggaggagactcacgtaggaaggtttccttagtaattt 2188719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 24577864 - 24577813
Alignment:
Q  38 tatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 89  Q
    |||||||| ||||||||  |||||| ||||||||| ||||||||||||||||    
T  24577864 tatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatg 24577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 37193064 - 37193107
Alignment:
Q  61 gagttcttcagaggtggaggagactgatgcaggagggttttctt 104  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  37193064 gagttcttcagagatggagtaaactgatgcaggagggttttctt 37193107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 3064121 - 3064051
Alignment:
Q  42 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3064121 agaacgagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaattt 3064051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 365972 - 365863
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| | |||||||||| ||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||    
T  365972 gttcattggaagagtcaacatacatggaa-gctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgcaggaggatttt 365874  T
Q  102 cttagtaattt 112  Q
     ||||||||||    
T  365873 attagtaattt 365863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 8536719 - 8536655
Alignment:
Q  36 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 100  Q
    ||||||||||  ||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||||    
T  8536719 tttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 2473045 - 2472969
Alignment:
Q  36 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||||||||| |||||||||||||||||||||| | | ||||||||  ||||| ||  | |||||| ||||||||||    
T  2473045 tttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaattt 2472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 43304306 - 43304270
Alignment:
Q  76 ggaggagactgatgcaggagggttttcttagtaattt 112  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaattt 43304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  49 gaactcggggtcgagttcttcagaggtggaggagactgatgcagga 94  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 18203152 - 18203265
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||  |||||||||||||||| |||| | |||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||    
T  18203152 gttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgtaggaggg-ttt 18203249  T
Q  102 cttagtaattttatag 117  Q
    || |||||||||||||    
T  18203250 ctcagtaattttatag 18203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 30049629 - 30049699
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30049629 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 30051916 - 30051986
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30051916 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 12881740 - 12881852
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    ||||||||||| ||||||||||||| | |||  ||| ||| ||| |||| ||||||||||||||||||  |||||||||||||||||| ||||||||||     
T  12881740 gttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgtaggagggtttc 12881838  T
Q  102 cttagtaattttat 115  Q
    ||||||||||||||    
T  12881839 cttagtaattttat 12881852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 3541959 - 3542026
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  3541959 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaatttta 3542026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 22888970 - 22889080
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||| |||||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| |||||||||||    
T  22888970 gttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggtttt 22889069  T
Q  102 cttagtaattt 112  Q
    |||||||||||    
T  22889070 cttagtaattt 22889080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 22873527 - 22873637
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||| |||||| | |||| |||||||| || ||||||| ||| |||| ||| | ||||||||| |||||||||| |||||||||||    
T  22873527 gttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtaggagggtttt 22873626  T
Q  102 cttagtaattt 112  Q
    |||| ||||||    
T  22873627 cttaataattt 22873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 22910513 - 22910623
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| |||||||||||    
T  22910513 gttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggtttt 22910612  T
Q  102 cttagtaattt 112  Q
    |||||||||||    
T  22910613 cttagtaattt 22910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 34374157 - 34374051
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| | |||||||||||||| | || | |||||||| || ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||     
T  34374157 gttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagggtttc 34374058  T
Q  102 cttagta 108  Q
    |||||||    
T  34374057 cttagta 34374051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 12778777 - 12778664
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||||||||| || || | ||  ||||||| ||||| | |||||| |||||||||||||||||||||||||||| | |||||||||    
T  12778777 gttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagggtttt 12778680  T
Q  102 cttagtaattttatag 117  Q
    | ||||| || |||||    
T  12778679 catagtatttctatag 12778664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 11194398 - 11194443
Alignment:
Q  67 ttcagaggtggaggagactgatgcaggagggttttcttagtaattt 112  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggagagttttcttagtaattt 11194443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 8047717 - 8047661
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 91  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  8047717 ctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 18726879 - 18726915
Alignment:
Q  81 agactgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatag 18726915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 32361109 - 32361173
Alignment:
Q  37 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||| || ||||||||| ||||||||| || |||||||||| ||||| ||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 18720031 - 18720069
Alignment:
Q  48 agaactcggggtcgagttcttcagaggtggaggagactg 86  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18720031 agaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 22716329 - 22716444
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||  | |||||    
T  22716329 gttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgcagttgagtttt 22716428  T
Q  102 cttagtaattttatag 117  Q
     |||||||||| ||||    
T  22716429 attagtaatttaatag 22716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 22988888 - 22988773
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||  | |||||    
T  22988888 gttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgcagttgagtttt 22988789  T
Q  102 cttagtaattttatag 117  Q
     |||||||||| ||||    
T  22988788 attagtaatttaatag 22988773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 13085471 - 13085398
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg---ttttcttagtaattttatag 117  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||   |||| |||||||||||||||    
T  13085471 gagaactcggggtcgagttcttcagagatggaagagactgatgtaggagggtgttttttttagtaattttatag 13085398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 6659697 - 6659640
Alignment:
Q  56 gggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 114  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  6659697 gggtcgagttcttcagaggtagaggagactgatgtaggaggg-tttcttagtaatttta 6659640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 10494639 - 10494752
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||| |||||||| | ||||  |||||||| |  |||||| | |||||||||||||||| || ||| ||||||||| | ||||||||     
T  10494639 gttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagggtttc 10494738  T
Q  102 cttagtaattttat 115  Q
    ||||||| ||||||    
T  10494739 cttagtatttttat 10494752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 7635005 - 7635092
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 89  Q
    |||||| | |||||||||||||||| |  |||  ||||| |||| ||||| | ||||||||||||||||||| |||||||||||||||    
T  7635005 gttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatg 7635092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 9260313 - 9260375
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 97  Q
    |||||||| ||  ||||||||||||||||||||| ||| || ||||||| ||||||| |||||    
T  9260313 ctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgcatgaggg 9260375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 45993 - 45923
Alignment:
Q  47 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45993 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 45923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 10366 - 10476
Alignment:
Q  2 gttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 101  Q
    |||||||| ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| |||||||||||    
T  10366 gttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggtttt 10465  T
Q  102 cttagtaattt 112  Q
    |||||||||||    
T  10466 cttagtaattt 10476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 49063 - 49127
Alignment:
Q  36 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 100  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  49063 tttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggagagttt 49127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 37484 - 37523
Alignment:
Q  56 gggtcgagttcttcagaggtggaggagactgatgcaggag 95  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37484 gggtcgagttcttcagaggtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 145449 - 145555
Alignment:
Q  2 gttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 100  Q
    |||||||||||||||||||| || |  || | | |||||||||||  | |||||||| || |||||||| ||||||||||||||||||| ||||||||||    
T  145449 gttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggagggttt 145547  T
Q  101 tcttagta 108  Q
    | ||||||    
T  145548 tattagta 145555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 144243 - 144177
Alignment:
Q  35 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggag---actgatgcaggagggtt 99  Q
    |||||||||||  |||||||||| || |||||||||||| ||||||||   |||||||||||||||||    
T  144243 ctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgcaggagggtt 144177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University