View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_high_7 (Length: 538)

Name: NF3114_high_7
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_high_7
NF3114_high_7
[»] chr2 (38 HSPs)
chr2 (10-248)||(9174534-9174772)
chr2 (178-266)||(9833042-9833131)
chr2 (173-332)||(26626759-26626916)
chr2 (170-266)||(26143735-26143830)
chr2 (170-248)||(7043834-7043912)
chr2 (214-303)||(43199338-43199428)
chr2 (213-289)||(32364794-32364871)
chr2 (217-305)||(42907286-42907375)
chr2 (228-343)||(3611164-3611280)
chr2 (170-262)||(19608723-19608815)
chr2 (165-241)||(41407166-41407242)
chr2 (231-321)||(18066069-18066160)
chr2 (271-321)||(1625882-1625932)
chr2 (228-301)||(25609734-25609808)
chr2 (212-332)||(8017357-8017477)
chr2 (171-303)||(9395011-9395144)
chr2 (213-317)||(29628785-29628889)
chr2 (172-272)||(39567784-39567885)
chr2 (254-321)||(11513862-11513930)
chr2 (212-264)||(23747226-23747278)
chr2 (221-316)||(41875696-41875792)
chr2 (214-345)||(42457872-42458004)
chr2 (171-317)||(43570297-43570442)
chr2 (221-264)||(21280489-21280532)
chr2 (232-290)||(35459852-35459911)
chr2 (254-320)||(41851499-41851566)
chr2 (227-308)||(6993775-6993856)
chr2 (166-224)||(36534664-36534722)
chr2 (170-200)||(39659678-39659708)
chr2 (171-201)||(40835435-40835465)
chr2 (256-320)||(33931609-33931674)
chr2 (213-285)||(42420368-42420441)
chr2 (168-321)||(44589913-44590066)
chr2 (254-321)||(12464511-12464579)
chr2 (214-301)||(36114581-36114669)
chr2 (276-332)||(39983329-39983385)
chr2 (173-201)||(41449791-41449819)
chr2 (216-264)||(44786501-44786549)
[»] chr1 (50 HSPs)
chr1 (225-425)||(7244592-7244792)
chr1 (435-538)||(7244444-7244547)
chr1 (170-299)||(37841878-37842008)
chr1 (173-363)||(7069183-7069375)
chr1 (213-285)||(8852783-8852856)
chr1 (228-332)||(49888705-49888810)
chr1 (228-319)||(29793720-29793812)
chr1 (172-266)||(27146342-27146436)
chr1 (174-301)||(836397-836519)
chr1 (228-292)||(34619445-34619510)
chr1 (229-292)||(4256109-4256173)
chr1 (230-321)||(37842393-37842485)
chr1 (213-292)||(51190784-51190864)
chr1 (170-301)||(1829015-1829144)
chr1 (229-332)||(7472251-7472354)
chr1 (170-241)||(37473269-37473340)
chr1 (170-241)||(44932061-44932132)
chr1 (170-245)||(47498958-47499033)
chr1 (170-224)||(27820476-27820530)
chr1 (254-320)||(51695534-51695600)
chr1 (221-321)||(1432446-1432547)
chr1 (169-202)||(3887759-3887792)
chr1 (172-241)||(33541837-33541906)
chr1 (228-363)||(3887628-3887764)
chr1 (271-343)||(7218090-7218162)
chr1 (271-319)||(25006074-25006122)
chr1 (250-345)||(34290196-34290292)
chr1 (213-301)||(38116246-38116332)
chr1 (221-292)||(172645-172716)
chr1 (169-200)||(473035-473066)
chr1 (213-272)||(9507088-9507147)
chr1 (177-240)||(23198364-23198427)
chr1 (230-308)||(34952155-34952234)
chr1 (170-241)||(38247324-38247394)
chr1 (170-245)||(45975570-45975645)
chr1 (228-289)||(7028230-7028292)
chr1 (254-304)||(11218000-11218050)
chr1 (229-302)||(36151562-36151636)
chr1 (171-201)||(46423151-46423181)
chr1 (171-201)||(51688576-51688606)
chr1 (232-300)||(38578469-38578538)
chr1 (172-201)||(39906524-39906553)
chr1 (170-239)||(41195325-41195394)
chr1 (170-202)||(2294983-2295015)
chr1 (221-292)||(4700133-4700205)
chr1 (170-242)||(14331659-14331731)
chr1 (228-319)||(17269188-17269280)
chr1 (169-201)||(24562472-24562504)
chr1 (173-201)||(27970432-27970460)
chr1 (228-303)||(36070188-36070264)
[»] chr5 (44 HSPs)
chr5 (212-345)||(12425493-12425627)
chr5 (182-363)||(39105356-39105538)
chr5 (170-332)||(9202775-9202938)
chr5 (213-320)||(7674571-7674679)
chr5 (166-245)||(28776851-28776930)
chr5 (170-224)||(13697905-13697959)
chr5 (177-289)||(465841-465954)
chr5 (229-354)||(12460006-12460131)
chr5 (213-292)||(42569047-42569127)
chr5 (173-320)||(34736566-34736713)
chr5 (175-272)||(5963370-5963468)
chr5 (171-237)||(32372495-32372561)
chr5 (166-246)||(30291136-30291217)
chr5 (170-247)||(32703561-32703638)
chr5 (213-292)||(3566385-3566465)
chr5 (271-319)||(10272471-10272519)
chr5 (170-272)||(6593179-6593282)
chr5 (274-341)||(28776978-28777045)
chr5 (170-248)||(42573891-42573970)
chr5 (215-332)||(4014451-4014569)
chr5 (171-248)||(10771990-10772068)
chr5 (169-219)||(12433521-12433571)
chr5 (170-236)||(16938001-16938067)
chr5 (276-341)||(2568645-2568710)
chr5 (228-332)||(32172591-32172696)
chr5 (171-245)||(6096427-6096498)
chr5 (228-292)||(29588818-29588882)
chr5 (228-319)||(34117576-34117665)
chr5 (170-248)||(14675012-14675091)
chr5 (228-302)||(19177417-19177492)
chr5 (228-286)||(37112331-37112390)
chr5 (271-321)||(6587145-6587195)
chr5 (177-246)||(8334464-8334534)
chr5 (221-287)||(11054117-11054183)
chr5 (170-224)||(40426632-40426686)
chr5 (171-200)||(12554334-12554363)
chr5 (274-303)||(14364224-14364253)
chr5 (171-224)||(24030548-24030601)
chr5 (257-321)||(32372591-32372656)
chr5 (254-330)||(34102343-34102420)
chr5 (271-308)||(40120102-40120139)
chr5 (228-292)||(16945050-16945113)
chr5 (161-189)||(25461457-25461485)
chr5 (170-233)||(34590355-34590419)
[»] chr4 (31 HSPs)
chr4 (173-332)||(3155486-3155646)
chr4 (171-272)||(2987069-2987171)
chr4 (165-292)||(26520296-26520425)
chr4 (171-355)||(49202527-49202711)
chr4 (223-303)||(25885792-25885873)
chr4 (165-319)||(17883942-17884098)
chr4 (228-319)||(8422879-8422969)
chr4 (170-319)||(30066806-30066957)
chr4 (228-344)||(27043845-27043962)
chr4 (170-343)||(1203132-1203302)
chr4 (189-272)||(42641721-42641804)
chr4 (271-345)||(20907329-20907403)
chr4 (171-245)||(44863077-44863151)
chr4 (213-266)||(6364072-6364125)
chr4 (228-308)||(18630618-18630699)
chr4 (171-272)||(50662820-50662921)
chr4 (228-303)||(47946136-47946212)
chr4 (165-320)||(51629986-51630142)
chr4 (214-332)||(56480271-56480391)
chr4 (170-201)||(17204008-17204039)
chr4 (170-201)||(45935382-45935413)
chr4 (213-292)||(49004039-49004117)
chr4 (170-224)||(437376-437430)
chr4 (163-224)||(19039653-19039715)
chr4 (171-248)||(11389407-11389484)
chr4 (171-200)||(25885756-25885785)
chr4 (272-321)||(35571669-35571718)
chr4 (171-239)||(50298411-50298480)
chr4 (228-292)||(21593079-21593143)
chr4 (173-201)||(22030092-22030120)
chr4 (160-248)||(22539159-22539247)
[»] chr3 (41 HSPs)
chr3 (170-319)||(30573954-30574103)
chr3 (235-321)||(30956664-30956751)
chr3 (235-321)||(30972476-30972563)
chr3 (221-303)||(44061079-44061162)
chr3 (164-245)||(29002955-29003036)
chr3 (177-241)||(28795961-28796025)
chr3 (213-321)||(49465703-49465810)
chr3 (212-345)||(20170722-20170854)
chr3 (212-248)||(10277379-10277415)
chr3 (208-248)||(20669097-20669137)
chr3 (171-279)||(34235157-34235265)
chr3 (212-248)||(47319381-47319417)
chr3 (213-248)||(20669547-20669582)
chr3 (175-246)||(47249582-47249653)
chr3 (174-315)||(25447288-25447430)
chr3 (210-272)||(46030908-46030970)
chr3 (237-341)||(20170470-20170575)
chr3 (271-332)||(21367649-21367710)
chr3 (169-201)||(944362-944394)
chr3 (228-344)||(39602225-39602341)
chr3 (170-201)||(849552-849583)
chr3 (255-317)||(14145877-14145940)
chr3 (213-289)||(34638034-34638112)
chr3 (171-292)||(35328231-35328351)
chr3 (170-201)||(46886856-46886887)
chr3 (233-315)||(52618946-52619029)
chr3 (170-241)||(53789590-53789661)
chr3 (228-318)||(21865516-21865605)
chr3 (166-200)||(24085485-24085519)
chr3 (213-302)||(31403281-31403371)
chr3 (240-321)||(33405205-33405287)
chr3 (171-241)||(35959585-35959655)
chr3 (161-231)||(47132238-47132308)
chr3 (213-243)||(50709500-50709530)
chr3 (194-243)||(12704123-12704172)
chr3 (211-292)||(50952255-50952335)
chr3 (276-332)||(22203417-22203473)
chr3 (173-225)||(34610941-34610993)
chr3 (213-245)||(37389124-37389156)
chr3 (174-202)||(39602336-39602364)
chr3 (221-292)||(44014211-44014283)
[»] chr8 (25 HSPs)
chr8 (174-332)||(9956841-9956998)
chr8 (156-272)||(34236028-34236145)
chr8 (228-332)||(10114428-10114532)
chr8 (170-308)||(900748-900887)
chr8 (172-286)||(41475133-41475248)
chr8 (170-272)||(26215376-26215478)
chr8 (208-303)||(16210942-16211038)
chr8 (214-299)||(3537091-3537177)
chr8 (171-241)||(14956424-14956494)
chr8 (208-289)||(37444485-37444567)
chr8 (227-308)||(42597338-42597420)
chr8 (228-292)||(1112791-1112856)
chr8 (228-331)||(7514516-7514620)
chr8 (271-319)||(24558835-24558883)
chr8 (169-201)||(29819049-29819081)
chr8 (177-240)||(10628204-10628267)
chr8 (171-206)||(27752433-27752468)
chr8 (213-302)||(3936772-3936862)
chr8 (213-263)||(8216803-8216853)
chr8 (170-200)||(18133556-18133586)
chr8 (240-292)||(35374440-35374493)
chr8 (271-315)||(9834833-9834877)
chr8 (221-292)||(16163345-16163417)
chr8 (161-201)||(22790501-22790541)
chr8 (169-241)||(36963474-36963546)
[»] chr7 (33 HSPs)
chr7 (171-320)||(47177517-47177667)
chr7 (169-291)||(43250747-43250871)
chr7 (171-292)||(47795838-47795958)
chr7 (170-303)||(19718887-19719021)
chr7 (174-248)||(33552933-33553007)
chr7 (170-320)||(33672958-33673108)
chr7 (228-302)||(3610797-3610872)
chr7 (171-332)||(20881663-20881825)
chr7 (167-241)||(21568757-21568831)
chr7 (166-224)||(36517481-36517539)
chr7 (173-234)||(28900760-28900821)
chr7 (228-304)||(45813235-45813312)
chr7 (221-332)||(39907734-39907846)
chr7 (229-307)||(30133988-30134067)
chr7 (170-245)||(46139822-46139897)
chr7 (228-306)||(33894561-33894639)
chr7 (254-343)||(39967884-39967974)
chr7 (230-315)||(44241800-44241885)
chr7 (178-245)||(7612346-7612414)
chr7 (221-332)||(12110291-12110403)
chr7 (170-202)||(28210325-28210357)
chr7 (170-202)||(40377996-40378028)
chr7 (229-303)||(30496643-30496718)
chr7 (171-201)||(18865219-18865249)
chr7 (178-248)||(21619295-21619365)
chr7 (228-317)||(27548201-27548291)
chr7 (221-302)||(36874022-36874104)
chr7 (166-199)||(30179954-30179987)
chr7 (171-243)||(32714302-32714375)
chr7 (229-308)||(1417203-1417283)
chr7 (169-201)||(11619355-11619387)
chr7 (254-301)||(30180015-30180063)
chr7 (161-201)||(45263954-45263994)
[»] chr6 (20 HSPs)
chr6 (213-321)||(9093594-9093703)
chr6 (163-248)||(430488-430574)
chr6 (229-303)||(20671921-20671996)
chr6 (170-245)||(35069432-35069507)
chr6 (170-291)||(264251-264373)
chr6 (218-264)||(24476530-24476576)
chr6 (228-320)||(10016483-10016576)
chr6 (228-292)||(29274296-29274361)
chr6 (223-291)||(31624191-31624260)
chr6 (161-241)||(6538378-6538458)
chr6 (173-240)||(847941-848008)
chr6 (166-201)||(9632777-9632812)
chr6 (228-303)||(12631550-12631623)
chr6 (254-303)||(32386619-32386669)
chr6 (171-283)||(9559617-9559730)
chr6 (228-291)||(507158-507222)
chr6 (236-319)||(1402942-1403026)
chr6 (173-201)||(10645488-10645516)
chr6 (229-292)||(24836266-24836330)
chr6 (213-292)||(32206087-32206167)
[»] scaffold0024 (3 HSPs)
scaffold0024 (217-289)||(21348-21421)
scaffold0024 (207-289)||(58854-58937)
scaffold0024 (228-316)||(27514-27603)
[»] scaffold0019 (1 HSPs)
scaffold0019 (193-271)||(104223-104301)
[»] scaffold0050 (1 HSPs)
scaffold0050 (171-200)||(58475-58504)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 9174534 - 9174772
Alignment:
Q  10 aacaaaatttacacactaaaatatcacaataatcatgtgtacgaatttagaagtaattgtaattaatgtaaaaagtttccagtgatctacatgaacaatg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9174534 aacaaaatttacacactaaaatatcacaataatcatgtgtacgaatttagaagtaattgtaattaatgtaaaaagtttccagtgatctacatgaacaatg 9174633  T
Q  110 caaaaactctttaatgacggtgtatactgtataccaattatatccatatgaactatggctctgtttggataaacaacttatttgcagcttatgacattag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  9174634 caaaaactctttaatgacggtgtatactgtataccaattatatccatatgaattatggctctgtttggataaacaacttatttgcagcttatgagattag 9174733  T
Q  210 catttatcatgataaacacttatgtataagctatttcta 248  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9174734 catttatcatgataaacacttatgtataagctatttcta 9174772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 9833042 - 9833131
Alignment:
Q  178 ataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataa 266  Q
    |||||||||||| ||| ||||||||  ||| ||||||||||||||||||||||||||||||| ||||||| | | | |||||||||||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctatttccataacaaaagataaaataa 9833131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 26626759 - 26626916
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaa--taaggtt 270  Q
    |||||||||||||||||||||||||||||  ||| |||  ||||||||||||| |||||||||||| |    | || | | ||||||||||   ||| |     
T  26626759 tttggataaacaacttatttgcagcttatagcataagctcttatcatgataaatacttatgtataaac----tttatagcaaaagataaaacgaaagtta 26626854  T
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
    |||||||||||||||||||| | | |||||||| |||| |||||| |||||  |||||||||    
T  26626855 aattgttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaata 26626916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 26143830 - 26143735
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataa 266  Q
    ||||||||||||||||||||||||||| |||| |||  |||| ||| |||||| | ||||| ||||||||||||||||| | | |||||||||||||    
T  26143830 ctgtttggataaacaacttatttgcagtttataacacaagcacttaccatgat-agcacttgtgtataagctatttctatagcaaaagataaaataa 26143735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 7043912 - 7043834
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    |||||||||||||||||||||||||||||||| ||||     |||||||  |||||| |||||||||||| ||||||||    
T  7043912 ctgtttggataaacaacttatttgcagcttataacatagatgtttatcacaataaacgcttatgtataagttatttcta 7043834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 43199338 - 43199428
Alignment:
Q  214 tatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttca 303  Q
    ||||||| ||| | ||| |||||||| |||||||||| | ||||||||||||| ||| |||| | ||||||||||||||| ||||||||||    
T  43199338 tatcatgttaagcgcttctgtataagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttca 43199428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 32364871 - 32364794
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagct 289  Q
    |||||||||||| ||||||||||||||||||||||| | |   |||||||||||  || |||||||||||||||||||    
T  32364871 ttatcatgataagcacttatgtataagctatttctataacttcagataaaataacattaaattgttttcgtataagct 32364794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 42907286 - 42907375
Alignment:
Q  217 catgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcaca 305  Q
    |||||||| ||||||  ||||||||||||||| | |  |||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||    
T  42907286 catgataagcacttacatataagctatttctataacagaagaaaaaataaagttaaattgttttcgtttaagctataagttgttttcaca 42907375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 3611164 - 3611280
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatg 326  Q
    |||||||||||| |||||||| | | |||| |||||||| ||||| ||||||| |||||   ||||   ||||||||||||| ||||||||||||  |||    
T  3611164 cttatgtataagttatttctatagcaaaaggtaaaataaagttaaattgtttttgtatagtttatagactgttttcacaagctatcttggagaacttatg 3611263  T
Q  327 aaaataggttaaaaaca 343  Q
    |||||| | ||||||||    
T  3611264 aaaataagctaaaaaca 3611280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 19608815 - 19608723
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaa 262  Q
    ||||||||||| ||| | ||||||||||||||  ||  ||||  || |||||||| |||||||||||||||||||| |||| | |||||||||    
T  19608815 ctgtttggatatacagcatatttgcagcttatagcacaagcacataccatgataagcacttatgtataagctatttttacagcaaaagataaa 19608723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 41407166 - 41407242
Alignment:
Q  165 tggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||| ||||||||||||||| ||| ||||||||||||  ||  |||  |||||||||||| ||||||||||||||||    
T  41407166 tggccctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagct 41407242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 18066069 - 18066160
Alignment:
Q  231 atgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||| ||||||||||||||   ||| || |||||| ||||| |||||||| ||||||||||| | |||||||| |||| ||||||||||||    
T  18066069 atgtagaagctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaac 18066160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 1625882 - 1625932
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||||||||||||||| |||| |||||||||| |||| ||||||||||||    
T  1625882 aattgttttcgtataagttataagttgttttcataagctatcttggagaac 1625932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 25609734 - 25609808
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgtttt 301  Q
    ||||||||||||||||||||| |   ||||||||||||| || || || ||||||||||||||||| ||||||||    
T  25609734 cttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctataagttgtttt 25609808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 8017357 - 8017477
Alignment:
Q  212 tttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcga 310  Q
    |||||||||||| || ||||||||| ||||||||||| | | || ||||||| || ||| |||| ||||| |||||||| ||   |||||||| |||| |    
T  8017357 tttatcatgatacacgcttatgtatcagctatttctata-caaaggataaaacaaagttaaattattttcatataagctgtaaactgttttcataagcta 8017455  T
Q  311 tcttggagaacgaatgaaaata 332  Q
    |||||||||||  |||||||||    
T  8017456 tcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 9395011 - 9395144
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat-aaggt 269  Q
    |||||||||| | | ||||||||| ||||||  ||  |||  ||||||||||||||||| ||||||||| | |||||| |   ||||||||||| ||| |    
T  9395011 tgtttggatacatagcttatttgcggcttatagcacaagctcttatcatgataaacactcatgtataagatttttctatagaaaaagataaaataaagct 9395110  T
Q  270 taattgttttcgtataagctatacgttgttttca 303  Q
     |||||||||| ||||| ||||| | ||||||||    
T  9395111 aaattgttttcatataatctataagctgttttca 9395144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 29628889 - 29628785
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaata-aggttaattgttttcgtataagctatacgttgttttcacaagcgat 311  Q
    ||||||||||||  |||||| || ||| |||||||| | | |||||||||||| | |||| ||||||| |||||||||||| |||||| ||| |||| ||    
T  29628889 ttatcatgataagtacttatataaaagttatttctataacaaaagataaaatataagtta-ttgtttttgtataagctataagttgttctcataagctat 29628791  T
Q  312 cttgga 317  Q
    ||||||    
T  29628790 cttgga 29628785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 39567784 - 39567885
Alignment:
Q  172 gtttggataaacaacttatttg-cagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt 270  Q
    ||||||||||||| |||| ||  ||||||||  ||| |||  |||||||||||| ||||| |||||||| |||||||| | | ||||||||||||| |||    
T  39567784 gtttggataaacagcttaattcacagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaaagataaaataaagtt 39567883  T
Q  271 aa 272  Q
    ||    
T  39567884 aa 39567885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 11513862 - 11513930
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||||||||||| || || |||||||| ||||||||||| |||||||||| |||| ||| ||||||||    
T  11513862 aaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcatggagaac 11513930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 23747226 - 23747278
Alignment:
Q  212 tttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat 264  Q
    ||||| |||||||||||||||||||||||||||| || | | |||||||||||    
T  23747226 tttatgatgataaacacttatgtataagctatttttatatcaaaagataaaat 23747278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 41875792 - 41875696
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttgg 316  Q
    |||| |||||| ||||||||| |||||  | | ||||||||||| | ||||| ||||||||||||||||| || | |||||||| |||| |||||||    
T  41875792 ataagcacttacgtataagctgtttctttaaccaaagataaaatgatgttaagttgttttcgtataagctgtaagctgttttcataagctatcttgg 41875696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 42457872 - 42458004
Alignment:
Q  214 tatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatc 312  Q
    ||||||||||| || |||||||||| ||||||||| |   ||||||||||||| ||| ||||||||| || |||||| |  | ||| |||| |||| |||    
T  42457872 tatcatgataagcatttatgtataatctatttctatagtaaaagataaaataaagttaaattgtttttgtttaagctcttagctgtattcataagctatc 42457971  T
Q  313 ttggagaacgaatgaaaataggttaaaaacaac 345  Q
    || ||||||  ||||||||| | | ||||||||    
T  42457972 ttagagaacatatgaaaataagctgaaaacaac 42458004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 317
Target Start/End: Original strand, 43570297 - 43570442
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat-aaggt 269  Q
    ||||||| |||||| ||||||||||||||||  ||  |||| |||||||||||| | ||  ||||||||||| ||||| |   ||| ||||||| ||| |    
T  43570297 tgtttgggtaaacagcttatttgcagcttatagcacaagcacttatcatgataagcgct--tgtataagctaattctatagtaaaatataaaatgaagtt 43570394  T
Q  270 taattgttttcgtataagctatacgttgttttcacaagcgatcttgga 317  Q
     |||||||||| | ||||||||||||| | |||| |||| ||| ||||    
T  43570395 aaattgttttcatttaagctatacgttatcttcataagccatcctgga 43570442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 21280532 - 21280489
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaat 264  Q
    |||| |||||||| |||||||||||||| |||||||||||||||    
T  21280532 ataagcacttatgcataagctatttctataccgaaagataaaat 21280489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 35459852 - 35459911
Alignment:
Q  232 tgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagcta 290  Q
    |||||||||||||| || ||| ||||||||||||| ||  ||||||||||||||||||||    
T  35459852 tgtataagctatttgtataccaaaagataaaataaagtcaaattgttttcgtataagcta 35459911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 41851499 - 41851566
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
    ||||||| ||||| ||||| ||||||| ||||| |||||| |||||||||| |||| |||||||||||    
T  41851499 aaagatacaataaagttaaattgtttttgtatatgctataagttgttttcagaagctatcttggagaa 41851566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 6993856 - 6993775
Alignment:
Q  227 acttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagc 308  Q
    |||||||| ||| ||||||||||||  |||||||||||||||| || || | ||| ||||||||||| |||||||||| ||||    
T  6993856 acttatgtttaacctatttctacaca-aaagataaaataaggtcaaattatattcatataagctataggttgttttcataagc 6993775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 36534664 - 36534722
Alignment:
Q  166 ggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    ||||||||||||||||||||||||||| ||| |||| |||| ||   ||||||||||||    
T  36534664 ggctctgtttggataaacaacttattttcagtttataacataagtgcttatcatgataa 36534722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 39659708 - 39659678
Alignment:
Q  170 ctgtttggataaacaacttatttgcagctta 200  Q
    |||||||||||||||||||||||||||||||    
T  39659708 ctgtttggataaacaacttatttgcagctta 39659678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 40835435 - 40835465
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||||    
T  40835435 tgtttggataaacaacttatttgcagcttat 40835465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 33931674 - 33931609
Alignment:
Q  256 agataaaataaggtta-attgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
    |||||||||||||| | |||||||| |||||||||||| | |||||||| |||| || ||||||||    
T  33931674 agataaaataaggtcagattgtttttgtataagctataagctgttttcataagctattttggagaa 33931609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 42420441 - 42420368
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtata 285  Q
    |||||||||||| | |||| ||||||||||||| || | | ||||||||||||| ||| ||||||||| |||||    
T  42420441 ttatcatgataagcgcttacgtataagctatttttatagcaaaagataaaataacgttaaattgtttttgtata 42420368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 321
Target Start/End: Original strand, 44589913 - 44590066
Alignment:
Q  168 ctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataag 267  Q
    |||||||  |||||||||| |||||| |||||||   || |||  ||||||||||||   |||||||||||| | |||||| | | || ||||| |||||    
T  44589913 ctctgttctgataaacaacatatttggagcttatagtataagcgcttatcatgataagtgcttatgtataagttgtttctatagcaaatgataagataag 44590012  T
Q  268 gttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
     | |||| ||| |  ||||| |||| |||||||||| |||| |||||| |||||    
T  44590013 ttcaattttttacagataagttataagttgttttcataagctatcttgaagaac 44590066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 12464579 - 12464511
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||||||||||| ||||| ||||||| ||||| |||||| | | |||||| |||| ||||||||||||    
T  12464579 aaagataaaataaagttaaattgtttttgtatatgctataagctattttcataagctatcttggagaac 12464511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 36114669 - 36114581
Alignment:
Q  214 tatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgtttt 301  Q
    |||||||||||   |||||| |||| ||| ||||| | | ||||||||||||| ||| ||||||||| |||||||| ||| ||||||||    
T  36114669 tatcatgataagtgcttatgcataacctagttctataacaaaagataaaataaagttaaattgtttttgtataagcaataagttgtttt 36114581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 39983329 - 39983385
Alignment:
Q  276 ttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
    ||||| ||||||||||| |||||||||| |||| ||| |||||| | ||||||||||    
T  39983329 ttttcatataagctataagttgttttcataagctatcctggagagctaatgaaaata 39983385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 41449791 - 41449819
Alignment:
Q  173 tttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||    
T  41449791 tttggataaacaacttatttgcagcttat 41449819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 44786549 - 44786501
Alignment:
Q  216 tcatgataaacacttatgtataagctatttctacaccgaaagataaaat 264  Q
    ||||| ||| |||||||||||||||||||||||||   |||||||||||    
T  44786549 tcatggtaagcacttatgtataagctatttctacaattaaagataaaat 44786501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 225 - 425
Target Start/End: Complemental strand, 7244792 - 7244592
Alignment:
Q  225 acacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaa 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  7244792 acacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcataagcgatcttggagaacgta 7244693  T
Q  325 tgaaaataggttaaaaacaacgtaagaacaaggtcataaaataagttgttttcataagttcctaaaatagactcacaaaacctatatcaatagataaact 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  7244692 tgaaaataggttaaaaacaacgtaagaacaaggtcataaaataagttgttttcataagttcctaaaatagtctcacaaaacttatatcaatagataaact 7244593  T
Q  425 c 425  Q
    |    
T  7244592 c 7244592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 435 - 538
Target Start/End: Complemental strand, 7244547 - 7244444
Alignment:
Q  435 gcatagaagaaaaattgaaaaaataatccagtttttcattataaatctcatttaataagtaaaatcacacaaaacattaaacaatctagcaaatttgtat 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7244547 gcatagaagaaaaattgaaaaaataatccagtttttcattataaatctcatttaataagtaaaatcacacaaaacattaaacaatctagcaaatttgtat 7244448  T
Q  535 aaaa 538  Q
    ||||    
T  7244447 aaaa 7244444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 37841878 - 37842008
Alignment:
Q  170 ctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataagg 268  Q
    |||||||| ||||||||||| ||||||||| ||  ||| |||| ||||||||||||  ||| |||||||||||||| ||| | | || |||||||||| |    
T  37841878 ctgtttgg-taaacaacttaatttgcagctaatagcataagcacttatcatgataagtactcatgtataagctattcctataacaaatgataaaataaag 37841976  T
Q  269 tt-aattgttttcgtataagctatacgttgtt 299  Q
    || |||||||||||||||||||||| ||||||    
T  37841977 ttaaattgttttcgtataagctatatgttgtt 37842008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 363
Target Start/End: Original strand, 7069183 - 7069375
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-- 270  Q
    |||||||||||| ||||||| ||||||||  || | | ||||||| |||||| |||||| |||||||||||| ||| | | |||||||||| ||   |      
T  7069183 tttggataaacagcttatttccagcttatagcactggtatttatcgtgataagcacttaagtataagctattactatagcaaaagataaaaaaaaaattg 7069282  T
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaacaacgtaagaacaaggtcataa 363  Q
    |||||||||||||||||||||| | || |||   |||| ||||||||||||  ||||||||   ||||||||||  || |||||| |||||||    
T  7069283 aattgttttcgtataagctataagctgcttttgtaagctatcttggagaacttatgaaaatgaattaaaaacaaattatgaacaatgtcataa 7069375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 8852783 - 8852856
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtta-attgttttcgtata 285  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |||| ||||||||| ||||    
T  8852783 ttatcatgataaacactaatgtataagctatttttacaacaaaagataaaataaagttatattgttttcttata 8852856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 49888705 - 49888810
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatg 326  Q
    ||||||||||||||||||||      ||||||||||||| ||| |||||||||||||||||||||  |||||||||| |||| ||||| ||||||  |||    
T  49888705 cttatgtataagctatttctttggaaaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataagctatcttagagaacttatg 49888804  T
Q  327 aaaata 332  Q
    ||||||    
T  49888805 aaaata 49888810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 29793720 - 29793812
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||||||| |||||||||||||| | |||||||| |||| ||||| |||||||||||||||||||| ||||  |||| |||| ||||| ||||    
T  29793720 cttatgtacaagctatttctacaacaaaagataacataaagttaagttgttttcgtataagctataagttgagttcataagctatcttcgaga 29793812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 27146436 - 27146342
Alignment:
Q  172 gtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataa 266  Q
    ||||||||||| | ||||||||||||||||  ||| || |  ||||||||||| |  ||||||||||| |||||||||| | |||||||||||||    
T  27146436 gtttggataaatagcttatttgcagcttatagcataagtacatatcatgataagcgtttatgtataaggtatttctacagcaaaagataaaataa 27146342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 836519 - 836397
Alignment:
Q  174 ttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat-aaggttaa 272  Q
    |||||||||||||||||||||||||||| |||  ||      | ||||||||||||||||| |||||||||| || |  |||||||||||| ||  | ||    
T  836519 ttggataaacaacttatttgcagcttataacaagag------ttatgataaacacttatgtgtaagctatttttatagtgaaagataaaataaaactaaa 836426  T
Q  273 ttgttttcgtataagctatacgttgtttt 301  Q
    ||||||| |||||||||||| ||| ||||    
T  836425 ttgtttttgtataagctataagttatttt 836397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 34619510 - 34619445
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    ||||||||||||| ||||||| | | ||||||||||||||||| ||||||||| ||||||||||||    
T  34619510 cttatgtataagccatttctataacaaaagataaaataaggttaaattgtttttgtataagctata 34619445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 4256173 - 4256109
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    |||||||||||||||||||||| | ||||||| ||||| ||| |||| |||||||||||||||||    
T  4256173 ttatgtataagctatttctacaacaaaagatacaataaagttaaattattttcgtataagctata 4256109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 321
Target Start/End: Complemental strand, 37842485 - 37842393
Alignment:
Q  230 tatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||||||||||||||||| | | |||||| |||||| ||| || ||| |||| |||||||||| |||||||||| |||| |||||| |||||    
T  37842485 tatgtataagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataagctataagttgttttcataagctatcttgaagaac 37842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 51190784 - 51190864
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    |||||||||||||||||||| || ||||||||| || | | ||||||||||||| ||| ||||||||| ||||||| ||||    
T  51190784 ttatcatgataaacacttatttaaaagctatttgtaaagcaaaagataaaataaagttaaattgtttttgtataagttata 51190864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 1829144 - 1829015
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    |||||||||||||||||||||||| | | |||  ||| | || |||||||||||| | ||||||||||||  |||| || | | ||||| ||||| || |    
T  1829144 ctgtttggataaacaacttatttgaaacctatagcataaacacttatcatgataagcgcttatgtataagtcatttttataacaaaaga-aaaat-agtt 1829047  T
Q  270 taattgttttcgtataagctatacgttgtttt 301  Q
    |||||||||| |||||| ||||| ||||||||    
T  1829046 taattgttttagtataatctataagttgtttt 1829015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 7472251 - 7472354
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaa 328  Q
    |||| ||||||||||||||| | | ||||||| |||||| | ||||||||| |||||| ||||| | ||||| || |||| |||||||||| |  |||||    
T  7472251 ttatttataagctatttctataacaaaagatataataagttaaattgtttttgtataatctataagctgtttccataagctatcttggagagcttatgaa 7472350  T
Q  329 aata 332  Q
    ||||    
T  7472351 aata 7472354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 37473269 - 37473340
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    ||||||||||||||||||||||||||||||||  ||  ||   ||||||||| || ||||||||||||||||    
T  37473269 ctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtataagct 37473340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 44932132 - 44932061
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||||||||||  || |||||||| ||| |||||| || |||||||||||| |||||| |||||||||    
T  44932132 ctgtttggataaacagtttgtttgcagcatataacattaacacttatcatgataagcacttaggtataagct 44932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 47499033 - 47498958
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    ||||||||||||||||||||||||||||||||  ||  ||   |||||||||||| | ||| ||||||||||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagctattt 47498958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 27820530 - 27820476
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    ||||||||||||||||||||||||||||||||  ||| |||  ||||||||||||    
T  27820530 ctgtttggataaacaacttatttgcagcttatagcataagcgcttatcatgataa 27820476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 51695600 - 51695534
Alignment:
Q  254 aaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
    ||||||||||||| || ||||||||||||||||| |||  | |||||||| |||| |||||||||||    
T  51695600 aaagataaaataaagtaaattgttttcgtataagttatcagatgttttcataagctatcttggagaa 51695534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 1432446 - 1432547
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||| ||| ||||||||||||||||||| |   ||||||||||||  ||| |||||||||  |||||||||||  ||||||||| || | ||||||||||    
T  1432446 ataagcacatatgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctataaattgttttcataaactatcttggaga 1432545  T
Q  320 ac 321  Q
    ||    
T  1432546 ac 1432547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 3887792 - 3887759
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttatg 202  Q
    ||||||||||||||||||||||||||||||||||    
T  3887792 tctgtttggataaacaacttatttgcagcttatg 3887759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 33541906 - 33541837
Alignment:
Q  172 gtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    ||||||||||||||||||||||||| ||||  ||  ||  ||||||||||||| | ||||||||||||||    
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagct 33541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 363
Target Start/End: Complemental strand, 3887764 - 3887628
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatg 326  Q
    ||||||||||||||||||| | | | ||||||||||||| ||| ||||  |||| ||  ||||||| | || ||| |||||| | || |||||||  |||    
T  3887764 cttatgtataagctatttcaatagcaaaagataaaataaagttaaattaatttcttacgagctataagctgattttacaagctagctaggagaacttatg 3887665  T
Q  327 aaaataggttaaaaacaacgtaagaacaaggtcataa 363  Q
    |||||| |||||||||| | || |||||| |||||||    
T  3887664 aaaataagttaaaaacagcttatgaacaatgtcataa 3887628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 7218162 - 7218090
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaaca 343  Q
    |||||||||| ||||||||||| |||||||||| || | ||| ||||||||  ||||||||| ||| ||||||    
T  7218162 aattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaaca 7218090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 25006122 - 25006074
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||||||||| ||||||||||| |||||||||| |||| ||||||||||    
T  25006122 aattgttttcatataagctataagttgttttcataagctatcttggaga 25006074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 34290196 - 34290292
Alignment:
Q  250 accgaaagataaaataaggttaattgt-tttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaacaac 345  Q
    |||| |||||||||||| ||||||| | ||| |||||||||||| | |||||||| |||| |||||| |||||  ||||||||| | | ||||||||    
T  34290196 accgcaagataaaataaagttaattttattttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaac 34290292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 38116332 - 38116246
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgtttt 301  Q
    |||||||||||| | ||||||||||||||||||| | | | ||||||||||| || | |||||| ||||||||||||| | ||||||||    
T  38116332 ttatcatgataagcgcttatgtataagctatttcaatagc-aaagataaaat-agttaaattgtgttcgtataagctagaagttgtttt 38116246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 172716 - 172645
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctata 292  Q
    |||||| ||||||||||||||||||||| | | |||||||| |||| ||||| | ||||| |||| ||||||    
T  172716 ataaactcttatgtataagctatttctataacaaaagataacataaagttaagttttttcttataggctata 172645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 473035 - 473066
Alignment:
Q  169 tctgtttggataaacaacttatttgcagctta 200  Q
    ||||||||||||||||||||||||||||||||    
T  473035 tctgtttggataaacaacttatttgcagctta 473066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 9507147 - 9507088
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa 272  Q
    ||||||| ||||||||| |||||||||||||||||| | | |||| |||||||| |||||    
T  9507147 ttatcataataaacactcatgtataagctatttctataacaaaagttaaaataatgttaa 9507088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 23198364 - 23198427
Alignment:
Q  177 gataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagc 240  Q
    |||||| |||||||||||||||||| |||| ||   ||||||| |||||||||||| |||||||    
T  23198364 gataaaaaacttatttgcagcttataacataagtgcttatcataataaacacttatttataagc 23198427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 34952155 - 34952234
Alignment:
Q  230 tatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagc 308  Q
    ||||||||||||||||||| | |  ||| |||||||| ||||| ||||||||| ||||||| || |||||||||| ||||    
T  34952155 tatgtataagctatttctagagcagaagttaaaataaagttaaattgttttcgaataagctgtaagttgttttcataagc 34952234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 38247324 - 38247394
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    ||||||||||||||| || |||||||||||||  ||  |||| |||||||||||  ||||||||||||||||    
T  38247324 ctgtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataagct 38247394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 45975570 - 45975645
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    ||||||||||||| | |||||||| ||||||| |||  | || |||||||||||| | ||||||||||| ||||||    
T  45975570 ctgtttggataaatagcttatttgtagcttataacacaaacacttatcatgataagcccttatgtataaactattt 45975645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 7028230 - 7028292
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagct 289  Q
    ||||||||||| ||||||||| | | ||||||||||||| ||||| ||||||| |||||||||    
T  7028230 cttatgtataaactatttctatagcaaaagataaaataaagttaagttgtttttgtataagct 7028292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 11218050 - 11218000
Alignment:
Q  254 aaagataaaataaggttaattgttttcgtataagctatacgttgttttcac 304  Q
    ||||||||||  || | |||||||||||||||||||||| |||||||||||    
T  11218050 aaagataaaactagttaaattgttttcgtataagctataagttgttttcac 11218000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 36151636 - 36151562
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttc 302  Q
    |||||||||||||||||| | | | ||||||||||||| ||  ||||||||||||||||| ||||  ||||||||    
T  36151636 ttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttataaattgttttc 36151562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 46423151 - 46423181
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||||    
T  46423151 tgtttggataaacaacttatttgcagcttat 46423181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 51688576 - 51688606
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||||    
T  51688576 tgtttggataaacaacttatttgcagcttat 51688606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 38578469 - 38578538
Alignment:
Q  232 tgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttt 300  Q
    ||||||||||||||||| | | |||||||| |||| ||| |||| |||| |||||||||||| |||||||    
T  38578469 tgtataagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 39906524 - 39906553
Alignment:
Q  172 gtttggataaacaacttatttgcagcttat 201  Q
    ||||||||||||||||||||||||||||||    
T  39906524 gtttggataaacaacttatttgcagcttat 39906553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 41195394 - 41195325
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataag 239  Q
    ||||||||||||| ||||||||||||||||||  ||  |||  ||||| |||||| | ||||||||||||    
T  41195394 ctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtataag 41195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 2294983 - 2295015
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatg 202  Q
    |||||||||||| ||||||||||||||||||||    
T  2294983 ctgtttggataagcaacttatttgcagcttatg 2295015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 4700205 - 4700133
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggttaatt-gttttcgtataagctata 292  Q
    |||| |||||||||| |||||||||||| | | ||||||||||||| |||| ||  ||| |||||||||||||    
T  4700205 ataagcacttatgtacaagctatttctataacaaaagataaaataaagttacttcatttccgtataagctata 4700133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 14331659 - 14331731
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagcta 242  Q
    |||||| |||||||| |||||||| |||||||  ||  |||  || ||||||||| |||||||||||||||||    
T  14331659 ctgtttagataaacagcttatttgaagcttatagcacaagcgcttctcatgataagcacttatgtataagcta 14331731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 17269188 - 17269280
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||||||||||| |||||||| | | ||||  ||||||| ||  |||||||||| ||||||| ||| |||||||||| |||| ||| ||||||    
T  17269188 cttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctggaga 17269280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 24562504 - 24562472
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||| ||||||||||||||||    
T  24562504 tctgtttggataaacagcttatttgcagcttat 24562472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 27970460 - 27970432
Alignment:
Q  173 tttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||    
T  27970460 tttggataaacaacttatttgcagcttat 27970432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 36070188 - 36070264
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttca 303  Q
    |||||||||  ||||||| || | | ||||||||||||| ||| |||||| |||| |||||||||| ||||||||||    
T  36070188 cttatgtatgggctatttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttca 36070264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 212 - 345
Target Start/End: Original strand, 12425493 - 12425627
Alignment:
Q  212 tttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcga 310  Q
    ||||||||||||||| ||||||||||| |||||| || |   ||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| |    
T  12425493 tttatcatgataaacgcttatgtataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagcta 12425592  T
Q  311 tcttggagaacgaatgaaaataggttaaaaacaac 345  Q
    |||||||||||  ||||||||| ||| ||||||||    
T  12425593 tcttggagaacttatgaaaataagttgaaaacaac 12425627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 182 - 363
Target Start/End: Original strand, 39105356 - 39105538
Alignment:
Q  182 acaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttc 280  Q
    ||||||||||||||||||||  ||| ||   |||||||||||| | ||||||||||||||||||||| | | ||| || |||| | ||||| ||||||||    
T  39105356 acaacttatttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctatttctatagctaaatatgaaatgaagttaaattgttttc 39105455  T
Q  281 gtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaacaacgtaagaacaaggtcataa 363  Q
    ||||||||||||   |||||||| |||| ||||||||||||  ||||||||| | |||||| | | || |||||| |||||||    
T  39105456 gtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataa 39105538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 332
Target Start/End: Complemental strand, 9202938 - 9202775
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    ||||||||||||||| ||||||||||||||||  ||  ||  |||||||||||||   ||||| ||||||||||||||  | | ||||||||||||| ||    
T  9202938 ctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctgtagcaaaagataaaataaagt 9202839  T
Q  270 t-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
    | |||||||||| ||||||| ||| | |||||||| |||  |||||| |||||  |||||||||    
T  9202838 taaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaata 9202775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 7674571 - 7674679
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgat 311  Q
    |||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||  || |||||||||| ||||||| |||   |||||||| |||| ||    
T  7674571 ttatcatgataagcacttatatataagctatttctataccaaaagataaaataaatttaaattgttttcttataagccataaaatgttttcataagctat 7674670  T
Q  312 cttggagaa 320  Q
    |||||||||    
T  7674671 cttggagaa 7674679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 28776851 - 28776930
Alignment:
Q  166 ggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    ||||||||||||||||||||||||||||||||||||  | | |||| ||||||||||||   ||||||||||||||||||    
T  28776851 ggctctgtttggataaacaacttatttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctattt 28776930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 13697959 - 13697905
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  13697959 ctgtttggataaacaacttatttgcagcttataacataagcatttatcatgataa 13697905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 465841 - 465954
Alignment:
Q  177 gataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattg 275  Q
    |||||||||||||||||||| |||| |||| |||   | ||||||||| ||||||| |||||||||||||||   | ||||||||||||| ||| |||||    
T  465841 gataaacaacttatttgcagtttataacataagctcatttcatgataagcacttatatataagctatttctatgacaaaagataaaataaagttaaattg 465940  T
Q  276 ttttcgtataagct 289  Q
    |||| |||||||||    
T  465941 tttttgtataagct 465954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 354
Target Start/End: Complemental strand, 12460131 - 12460006
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaa 328  Q
    |||||||||||||||||||| | | |||||||||||||| |  |||||||||  |||| ||||| ||||| ||||||||| |||||| ||| |  |||||    
T  12460131 ttatgtataagctatttctataacaaaagataaaataagttatattgttttcaaataaactataagttgtcttcacaagctatcttgcagagcttatgaa 12460032  T
Q  329 aataggttaaaaacaacgtaagaaca 354  Q
    |||| |  ||||||||| || |||||    
T  12460031 aataagccaaaaacaacatatgaaca 12460006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 42569127 - 42569047
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctata 292  Q
    |||||||||||| | |||||| | |||||||||||| | | ||||||||||||| || |||||||||||||||||||||||    
T  42569127 ttatcatgataagcgcttatgaaaaagctatttctatagcaaaagataaaataaagtctaattgttttcgtataagctata 42569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 34736713 - 34736566
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa 272  Q
    |||||||||||||||||| ||||||||||  ||  | || ||| |||||||| |||||||| |||||||||||||| | | ||||| |||  ||| | ||    
T  34736713 tttggataaacaacttatctgcagcttatagcacaaacacttaccatgataatcacttatgcataagctatttctatagcaaaagagaaataaagctaaa 34736614  T
Q  273 ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
    || |||| ||||||||||||   |||| |||  ||| |||||||||||    
T  34736613 ttatttttgtataagctataaactgttatcattagctatcttggagaa 34736566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 5963468 - 5963370
Alignment:
Q  175 tggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa 272  Q
    ||||||||||||||| ||||||  ||||  ||| ||||||||||||||||| | |||||||| || ||||||||| |  |||||||||||||| |||||    
T  5963468 tggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaa 5963370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 32372495 - 32372561
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtata 237  Q
    |||||||||||||||||||||||||||||||  ||  |||| |||||||||||| | ||||||||||    
T  32372495 tgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataagcccttatgtata 32372561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 30291136 - 30291217
Alignment:
Q  166 ggctctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttc 246  Q
    |||||||||||||||| ||||||| ||||||||||||  ||| | || |||||||||||||| |||||| |||| |||||||    
T  30291136 ggctctgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatgcataacctatttc 30291217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 32703638 - 32703561
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttct 247  Q
    |||||| || ||||||||||||||||||||||  ||  ||||||||||||||||| | |||||||  |||||||||||    
T  32703638 ctgtttagaaaaacaacttatttgcagcttatagcacaagcatttatcatgataagcgcttatgttaaagctatttct 32703561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 3566465 - 3566385
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    |||||||||||| ||||||  ||||||||||||||| ||| ||||| ||||||| ||| |||| |||| ||||||||||||    
T  3566465 ttatcatgataagcacttacctataagctatttctatacccaaagagaaaataaagttaaattatttttgtataagctata 3566385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 10272519 - 10272471
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  10272519 aattgttttcgtataagctataagttgttttcataagccatcttggaga 10272471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 6593179 - 6593282
Alignment:
Q  170 ctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataagg 268  Q
    |||||||||||||||||||| ||| ||||||||  ||| | |||||||| |||||  | ||||||||||| | ||||||| | | ||||||||||||| |    
T  6593179 ctgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataaacaatttctataacaaaagataaaataaag 6593278  T
Q  269 ttaa 272  Q
    ||||    
T  6593279 ttaa 6593282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 28776978 - 28777045
Alignment:
Q  274 tgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaa 341  Q
    |||||||||||| |||||| | |||||||| |||| |||||||||||| |||||||||| | ||||||    
T  28776978 tgttttcgtataggctataagctgttttcataagctatcttggagaactaatgaaaataagataaaaa 28777045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 42573970 - 42573891
Alignment:
Q  170 ctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||||||||||||| |||| ||||||||||||  | | |||  |||||||||||| | |||||||||||||||||||||    
T  42573970 ctgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttcta 42573891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 332
Target Start/End: Complemental strand, 4014569 - 4014451
Alignment:
Q  215 atcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtta-attgttttcgtataagctatacgttgttttcacaagcgatct 313  Q
    |||||||||| | | ||||||||||||||||||| | | ||||||||||||| |||| |||||||| | | ||   ||| | |||||||| |||| ||||    
T  4014569 atcatgataagcgcctatgtataagctatttctatagcaaaagataaaataaagttagattgtttttggaaaaatgataagctgttttcataagctatct 4014470  T
Q  314 tggagaacgaatgaaaata 332  Q
    ||||||||  |||||||||    
T  4014469 tggagaacttatgaaaata 4014451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 10772068 - 10771990
Alignment:
Q  171 tgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    |||||| ||| |||||||| ||||||||||||  ||| ||   |||||||||||||||| |||||||||||||||||||    
T  10772068 tgtttgaatatacaacttaatttgcagcttatagcataagtgcttatcatgataaacacatatgtataagctatttcta 10771990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 12433571 - 12433521
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttatgacattagcatttatcat 219  Q
    ||||||||||||||||||||||||||||||||| |||  ||| ||||||||    
T  12433571 tctgtttggataaacaacttatttgcagcttataacacaagcgtttatcat 12433521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 16938067 - 16938001
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtat 236  Q
    ||||||||| |||||||||||||| ||||||| |||  ||  ||||||||||||| |||||||||||    
T  16938067 ctgtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataagcacttatgtat 16938001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 2568645 - 2568710
Alignment:
Q  276 ttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaa 341  Q
    ||||||||||||||||| |||||||||| |||| ||| |||||| | |||||||||| | ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaa 2568710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 32172591 - 32172696
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatg 326  Q
    ||||||||||| ||||||||||| | ||||||||||| | || || |||||| | ||||||||||| | |||||||| |||| ||| || ||||| ||||    
T  32172591 cttatgtataaactatttctacaacaaaagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctatcatgaagaactaatg 32172690  T
Q  327 aaaata 332  Q
     |||||    
T  32172691 gaaata 32172696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 6096427 - 6096498
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    |||||| ||||||||||||||||||||| ||   |  |||  |||||||||||| ||||||||||||||||||||    
T  6096427 tgtttgtataaacaacttatttgcagctcat---agaagctcttatcatgataagcacttatgtataagctattt 6096498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 29588818 - 29588882
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctata 292  Q
    ||||||||||||||||||||| | | ||| ||||||||| |  |||||||||| |||||||||||    
T  29588818 cttatgtataagctatttctataacaaaatataaaataatgaaaattgttttcatataagctata 29588882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 34117665 - 34117576
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||||||||||| |||||||  | | ||||||||||||||||  ||| ||| | ||||||||||| |||| ||||| |||| ||||||||||    
T  34117665 cttatgtataagttatttctttaacaaaagataaaataaggt--attatttacatataagctataagttgctttcataagctatcttggaga 34117576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 14675091 - 14675012
Alignment:
Q  170 ctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||||||| |||||||||| ||||||||||||| ||| |  | ||||||||||||   |||||||| ||||||||||||    
T  14675091 ctgtttggacaaacaacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctatttcta 14675012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 19177417 - 19177492
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaa-taaggttaattgttttcgtataagctatacgttgttttc 302  Q
    ||||||||||| ||||||||||| |  ||||||||| ||||  ||| ||||||| ||||||||||| |||||||||    
T  19177417 cttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctataagttgttttc 19177492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 37112390 - 37112331
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataa 286  Q
    ||||||||||||||||||||||| | |||||||||| || ||| ||||||||| ||||||    
T  37112390 cttatgtataagctatttctacagcaaaagataaaacaaagttaaattgtttttgtataa 37112331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 6587195 - 6587145
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    |||||||||||||||||||||| |||||||||| |||| ||  ||||||||    
T  6587195 aattgttttcgtataagctataagttgttttcataagctatagtggagaac 6587145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 8334464 - 8334534
Alignment:
Q  177 gataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttc 246  Q
    ||||||||||||| ||||||||||||| |||||||  |||||||||||  | ||||| ||||| |||||||    
T  8334464 gataaacaacttaatttgcagcttatgtcattagctcttatcatgatacgcgcttatctataaactatttc 8334534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 11054117 - 11054183
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataag 287  Q
    |||||| ||||||||||||||||||||| |   ||||||||||||| || | | |||||||||||||    
T  11054117 ataaacgcttatgtataagctatttctataataaaagataaaataaagtaattagttttcgtataag 11054183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 40426632 - 40426686
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    |||||||||||||||||| |||||||||||||  ||  |||| ||||||||||||    
T  40426632 ctgtttggataaacaactcatttgcagcttatagcacaagcacttatcatgataa 40426686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 12554334 - 12554363
Alignment:
Q  171 tgtttggataaacaacttatttgcagctta 200  Q
    ||||||||||||||||||||||||||||||    
T  12554334 tgtttggataaacaacttatttgcagctta 12554363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 14364224 - 14364253
Alignment:
Q  274 tgttttcgtataagctatacgttgttttca 303  Q
    ||||||||||||||||||||||||||||||    
T  14364224 tgttttcgtataagctatacgttgttttca 14364253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 24030601 - 24030548
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    |||||||||||||| ||||||||||||||||  ||  |||| ||||||||||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataa 24030548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 32372591 - 32372656
Alignment:
Q  257 gataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    |||||||||| ||| ||||||||| ||||| |||||| | ||||||||||||  ||||||||||||    
T  32372591 gataaaataaagttgaattgtttttgtatatgctataagctgttttcacaagttatcttggagaac 32372656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 34102420 - 34102343
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaa 330  Q
    ||||||||||||| ||||| ||||||| ||||| |||||| |||||||| | |||| || |||||||||  |||||||    
T  34102420 aaagataaaataatgttaatttgtttttgtatatgctataagttgtttttataagccatgttggagaactcatgaaaa 34102343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 40120102 - 40120139
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagc 308  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  40120102 aattgttttcatataagctataggttgttttcacaagc 40120139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 16945113 - 16945050
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctata 292  Q
    |||||||||||||||||||||||   ||||||||||| || | |||||||||| || ||||||||    
T  16945113 cttatgtataagctatttctacaagaaaagataaaat-agttaaattgttttcatagaagctata 16945050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 25461485 - 25461457
Alignment:
Q  161 actatggctctgtttggataaacaactta 189  Q
    |||||||||||||||||||||||||||||    
T  25461485 actatggctctgtttggataaacaactta 25461457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 34590419 - 34590355
Alignment:
Q  170 ctgtttggataaacaacttattt-gcagcttatgacattagcatttatcatgataaacacttatg 233  Q
    |||||||||||||| |||||||| |||||||||   || || |||||||||||||| ||||||||    
T  34590419 ctgtttggataaacgacttattttgcagcttataggataagtatttatcatgataagcacttatg 34590355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 3155486 - 3155646
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-a 271  Q
    |||||||||||||||||| ||||||||||   |  |||  |||||||||||| ||  ||||||||||||||||||| | | ||||||||||||| ||| |    
T  3155486 tttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataagcatgtatgtataagctatttctatagcaaaagataaaataaagttaa 3155585  T
Q  272 attgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
    |||||||| ||| |||||| | | |||||||| || | |||||| ||||| ||||||||||    
T  3155586 attgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaata 3155646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 2987069 - 2987171
Alignment:
Q  171 tgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    ||||||||||||||| ||| |||||||||||| |||| ||  ||||||||||||| ||||||| ||||||||||||||||| | ||| ||||||||| ||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctatttctacaacaaaaaataaaataaagt 2987168  T
Q  270 taa 272  Q
    |||    
T  2987169 taa 2987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 26520425 - 26520296
Alignment:
Q  165 tggctctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaa 263  Q
    |||| |||||||||||||||||||| ||||| |||| |  ||| ||  ||||||||||||| ||||||||||||| || |||||| | | |||||| |||    
T  26520425 tggccctgtttggataaacaacttaatttgctgcttctagcataagtgtttatcatgataagcacttatgtataaactgtttctataacaaaagatgaaa 26520326  T
Q  264 taaggtt-aattgttttcgtataagctata 292  Q
    ||| ||| |||||||||||| |||||||||    
T  26520325 taaagttaaattgttttcgtgtaagctata 26520296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 355
Target Start/End: Original strand, 49202527 - 49202711
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaata-aggt 269  Q
    |||||||||||||||||||||||||||||||   |  |||| ||| |||||||     |||||||||||||||||||| |   |||| ||||| | |  |    
T  49202527 tgtttggataaacaacttatttgcagcttatagtacaagcacttaacatgataggtt-ttatgtataagctatttctataataaaaggtaaaacagattt 49202625  T
Q  270 taattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaacaacgtaagaacaa 355  Q
    |||||||||  |||||||||||| |||||||||  |||| |||||||| ||| |||||||||| ||| |||||||| || ||||||    
T  49202626 taattgtttcggtataagctataagttgttttcgtaagctatcttggataactaatgaaaataagttgaaaacaacttatgaacaa 49202711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 25885792 - 25885873
Alignment:
Q  223 aaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttca 303  Q
    |||||||||||||| |||| |||||| | | ||||||||||||| ||| |||||||||||| ||||||||| ||||||||||    
T  25885792 aaacacttatgtattagctctttctatagcaaaagataaaataaagttaaattgttttcgtgtaagctataagttgttttca 25885873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 319
Target Start/End: Original strand, 17883942 - 17884098
Alignment:
Q  165 tggctctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaa 263  Q
    ||||||||||| ||||||||||||| |||  |||||||  ||| || | |||||||| |||   || |||| ||||||||||||| | | ||||||||||    
T  17883942 tggctctgtttcgataaacaacttaatttttagcttatagcataaggacttatcatggtaagtgctcatgtgtaagctatttctataacaaaagataaaa 17884041  T
Q  264 taaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    ||| ||| ||||||||| ||||||| |||  |||||||||| |||| || |||||||    
T  17884042 taaagttaaattgtttttgtataagttatcagttgttttcataagctatattggaga 17884098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 8422969 - 8422879
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||||||||||||||||| || |   ||||||||||||| || | |||||||| ||||||||||| ||||||||||||| | ||||||||||    
T  8422969 cttatgtataagctatttttataaaaaaagataaaataaagtca-ttgttttcatataagctataagttgttttcacaatctatcttggaga 8422879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 30066957 - 30066806
Alignment:
Q  170 ctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataagg 268  Q
    ||||||| |||||||| ||| ||||||||||||  ||| |||  |||| ||||||| ||||| |||||||||||||| || ||| ||||||||   || |    
T  30066957 ctgtttgcataaacaatttaatttgcagcttatagcataagcgcttataatgataagcacttgtgtataagctatttatataccaaaagataagcaaaag 30066858  T
Q  269 tta-attgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    ||| ||||||||||||||| || || | |||| ||| |||| ||||||||||    
T  30066857 ttacattgttttcgtataaactgtaagctgttctcataagctatcttggaga 30066806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 344
Target Start/End: Complemental strand, 27043962 - 27043845
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatg 326  Q
    |||||||||||| || || || | | || |||||||||| ||||| |||||||||||||||||||| | |||||| | || | ||||||||||||| |||    
T  27043962 cttatgtataaggtacttatataacaaaggataaaataaagttaaattgttttcgtataagctataagatgtttttataaactatcttggagaacgtatg 27043863  T
Q  327 aaaataggttaaaaacaa 344  Q
    || ||| | |||||||||    
T  27043862 aatataagctaaaaacaa 27043845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 343
Target Start/End: Complemental strand, 1203302 - 1203132
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    |||||||||||||||| ||||||||||||||| |     |   ||||||||| || || || ||||||||||||||||| | | ||| ||||||||| ||    
T  1203302 ctgtttggataaacaatttatttgcagcttataa-----gtgcttatcatgaaaagcatttttgtataagctatttctatagcaaaacataaaataaagt 1203208  T
Q  270 taattgtttt--cgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaaca 343  Q
     | || ||||  ||||||||||||| ||||| |||| |||  ||||||||||||  || |||||| | ||||||||    
T  1203207 aatttttttttccgtataagctataagttgtcttcataagttatcttggagaacttattaaaataagctaaaaaca 1203132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 42641804 - 42641721
Alignment:
Q  189 atttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa 272  Q
    ||||||||||||| |||| |||| ||||||||||||    |||||||||||||||||| | | | ||||||||||||| |||||    
T  42641804 atttgcagcttattacataagcacttatcatgataagtgtttatgtataagctatttccataacaaaagataaaataatgttaa 42641721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 20907329 - 20907403
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaacaac 345  Q
    |||||||||| |||||||||||   ||||||||||||| ||| || ||||| |||||||||| ||| ||||||||    
T  20907329 aattgttttcatataagctataaactgttttcacaagctatcctgaagaaccaatgaaaataagttgaaaacaac 20907403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 44863151 - 44863077
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    |||||||||||||||||||||||||||||||  ||  |||| || |||||||||   |||||| |||||||||||    
T  44863151 tgtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgataagtgcttatgcataagctattt 44863077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 6364072 - 6364125
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataa 266  Q
    |||||| ||||| ||||||||||||||||||||||| | | |||||||||||||    
T  6364072 ttatcaagataagcacttatgtataagctatttctataacaaaagataaaataa 6364125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 18630618 - 18630699
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattg-ttttcgtataagctatacgttgttttcacaagc 308  Q
    |||||| |||| ||||||| | | | ||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||    
T  18630618 cttatgcataaactatttcaataacaaaagataaaataaagtcaattggttttcatataagctataagttgttttcacaagc 18630699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 50662921 - 50662820
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt 270  Q
    |||||||||||||||||||||||||||||||  ||  ||   |||||||||| | |  ||||||||||||||||| || | |  |||||||||||| |||    
T  50662921 tgtttggataaacaacttatttgcagcttatatcacaagagcttatcatgatgagcgtttatgtataagctatttttatagcataagataaaataatgtt 50662822  T
Q  271 aa 272  Q
    ||    
T  50662821 aa 50662820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 47946136 - 47946212
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttca 303  Q
    ||||| |||||| |||||||| | || |||||||||| | ||||| ||||||||||||||||||||  |||||||||    
T  47946136 cttatttataagttatttctataacgtaagataaaatgaagttaaattgttttcgtataagctataaattgttttca 47946212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 51629986 - 51630142
Alignment:
Q  165 tggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat 264  Q
    ||||||||||| |||||||| ||||||||  |||||  |||  ||   |||| ||||||| ||||| |||  ||||||||| || | | |||||||||||    
T  51629986 tggctctgtttagataaacaccttatttgaggcttacaacacaagtgcttattatgataagcacttgtgttcaagctatttatatagcaaaagataaaat 51630085  T
Q  265 aaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
    || ||| |||||||||  ||||||||||| | | |||||| |||| |||||| ||||    
T  51630086 aaagttaaattgttttgatataagctataagctattttcataagctatcttgaagaa 51630142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 332
Target Start/End: Original strand, 56480271 - 56480391
Alignment:
Q  214 tatcatgataaa-cacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgat 311  Q
    |||||||||||| |||||| |||||||||||||| | | | ||||| ||||||| ||| ||||||||  ||||||| |||| | |||||||| || | ||    
T  56480271 tatcatgataaaacacttacgtataagctatttccataacaaaagacaaaataaagttaaattgtttatgtataagttataagctgttttcataaactat 56480370  T
Q  312 cttggagaacgaatgaaaata 332  Q
    |||||||| |  |||||||||    
T  56480371 cttggagagcttatgaaaata 56480391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 17204008 - 17204039
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttat 201  Q
    ||||||||||||||||||||||||||||||||    
T  17204008 ctgtttggataaacaacttatttgcagcttat 17204039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 45935413 - 45935382
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttat 201  Q
    ||||||||||||||||||||||||||||||||    
T  45935413 ctgtttggataaacaacttatttgcagcttat 45935382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 49004117 - 49004039
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctata 292  Q
    |||| ||||||| | ||||||||||||| ||||||| | | ||||||||||| || | |||||||||||||| |||||||    
T  49004117 ttataatgataagcgcttatgtataagcaatttctatagcaaaagataaaat-agttaaattgttttcgtattagctata 49004039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 437430 - 437376
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    |||||||||||||| ||||||||||||||||| | |  ||| |||||||||||||    
T  437430 ctgtttggataaacgacttatttgcagcttataatacaagcttttatcatgataa 437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 19039653 - 19039715
Alignment:
Q  163 tatggctctgtttggataaacaactt-atttgcagcttatgacattagcatttatcatgataa 224  Q
    |||||| ||||||||||||||||||| ||||||||||||| | ||  ||| ||||||||||||    
T  19039653 tatggccctgtttggataaacaacttaatttgcagcttataatataggcaattatcatgataa 19039715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 11389407 - 11389484
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    |||||||||||||||||||||||||| ||||  ||| ||   ||||||||||||   |||||||||||  ||||||||    
T  11389407 tgtttggataaacaacttatttgcagtttatatcatgagtgcttatcatgataagtgcttatgtataaattatttcta 11389484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 25885756 - 25885785
Alignment:
Q  171 tgtttggataaacaacttatttgcagctta 200  Q
    ||||||||||||||||||||||||||||||    
T  25885756 tgtttggataaacaacttatttgcagctta 25885785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 35571718 - 35571669
Alignment:
Q  272 attgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||||||||||||||||||| | |||||||| |||| ||||| ||||||    
T  35571718 attgttttcgtataagctataagctgttttcataagctatcttagagaac 35571669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 50298411 - 50298480
Alignment:
Q  171 tgtttggataaacaactt-atttgcagcttatgacattagcatttatcatgataaacacttatgtataag 239  Q
    |||||||||||||||||| ||||| |||||||  ||| | || |||||||||||||  ||||||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataaatgcttatgtataag 50298480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 21593143 - 21593079
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctata 292  Q
    ||||||||||| ||||||||| | | ||||||||||||| || || | ||||| |||||||||||    
T  21593143 cttatgtataaactatttctataactaaagataaaataaagtcaactattttcatataagctata 21593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 22030092 - 22030120
Alignment:
Q  173 tttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||    
T  22030092 tttggataaacaacttatttgcagcttat 22030120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 22539247 - 22539159
Alignment:
Q  160 aactatggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||| ||| || |||||||||| ||||||||||||| ||||  ||| |||  ||||||||| || |  |||||||||||||| |||||    
T  22539247 aactaaggccctctttggataaataacttatttgcaggttatagcataagcccttatcatgacaagcgtttatgtataagctacttcta 22539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 30574103 - 30573954
Alignment:
Q  170 ctgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataagg 268  Q
    ||||||||||||||| | || ||||||||||||  ||| ||||||||||||||||| | ||||||||||||||||||||| |   ||||||||||||| |    
T  30574103 ctgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctata--aaaagataaaataaag 30574006  T
Q  269 ttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||| || ||||  ||||| ||||| | |||||||| |||| ||||||||||    
T  30574005 ttaagttttttttttataatctatatgatgttttcataagctatcttggaga 30573954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 30956751 - 30956664
Alignment:
Q  235 ataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    |||||||||||||| | | ||||||||||||| ||||| ||||||| ||||| |||||| |||||||||| |||| ||||||||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaac 30956664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 30972563 - 30972476
Alignment:
Q  235 ataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    |||||||||||||| | | ||||||||||||| ||||| ||||||| ||||| |||||| |||||||||| |||| ||||||||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagctatcttggagaac 30972476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 303
Target Start/End: Complemental strand, 44061162 - 44061079
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttca 303  Q
    |||| ||||| ||||||||||||||||| | | ||||||||||||||||| |||||||||  ||||||||||| ||||||||||    
T  44061162 ataagcacttctgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttca 44061079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 29003036 - 29002955
Alignment:
Q  164 atggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    ||||| ||||||||||||| || |||||||||||||||   |  ||| |||||||||||||||||||||||||||| |||||    
T  29003036 atggccctgtttggataaataatttatttgcagcttatagtaaaagcgtttatcatgataaacacttatgtataagttattt 29002955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 28796025 - 28795961
Alignment:
Q  177 gataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||||||||||| ||||||||  ||  | ||||||||||||||||||||||||||||||||    
T  28796025 gataaacaacttatttacagcttatagcacaaacatttatcatgataaacacttatgtataagct 28795961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 49465810 - 49465703
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatc 312  Q
    ||||||||| |||| ||||||| |||||||||| || | | ||||||||||||| ||||||| ||||||||| ||||| | |||||||||| |||| ||     
T  49465810 ttatcatgagaaacgcttatgtgtaagctatttttataacaaaagataaaataaagttaatttttttcgtat-agctaaatgttgttttcataagctata 49465712  T
Q  313 ttggagaac 321  Q
     ||||||||    
T  49465711 ctggagaac 49465703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 345
Target Start/End: Complemental strand, 20170854 - 20170722
Alignment:
Q  212 tttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcga 310  Q
    |||||||||||||||||||||| |||||||||||||| |  | || ||||||||| ||| ||||||||||||| ||||||||   |||||||  |||| |    
T  20170854 tttatcatgataaacacttatgaataagctatttctaaa--gcaatataaaataaagttcaattgttttcgtaaaagctataaactgttttcctaagcta 20170757  T
Q  311 tcttggagaacgaatgaaaataggttaaaaacaac 345  Q
    ||||| ||| |  ||| ||||| | ||||||||||    
T  20170756 tcttgtagagcttatgcaaataagctaaaaacaac 20170722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 10277415 - 10277379
Alignment:
Q  212 tttatcatgataaacacttatgtataagctatttcta 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  10277415 tttatcatgataaacacttatgtataagctatttcta 10277379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 20669097 - 20669137
Alignment:
Q  208 agcatttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20669097 agcatttatcatgataagcacttatgtataagctatttcta 20669137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 34235265 - 34235157
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatg--acattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataagg 268  Q
    ||||||||||||||||||||||| |||||||   ||||  ||  |||||||||||| |||||||||| |||||||||| | | | ||| ||||||||| |    
T  34235265 tgtttggataaacaacttatttgtagcttatagtacatgtgc--ttatcatgataagcacttatgtagaagctatttccatagcaaaatataaaataaag 34235168  T
Q  269 ttaattgtttt 279  Q
    |||||| ||||    
T  34235167 ttaattttttt 34235157  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 47319417 - 47319381
Alignment:
Q  212 tttatcatgataaacacttatgtataagctatttcta 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  47319417 tttatcatgataaacacttatgtataagctatttcta 47319381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 20669547 - 20669582
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  20669547 ttatcatgataaacacttatgtataagctatttcta 20669582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 47249653 - 47249582
Alignment:
Q  175 tggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttc 246  Q
    |||||||| | |||||||||||||||| |||  |||| |||||||||||||  || ||||||||||||||||    
T  47249653 tggataaatagcttatttgcagcttataacacaagcacttatcatgataaatgctcatgtataagctatttc 47249582  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 315
Target Start/End: Complemental strand, 25447430 - 25447288
Alignment:
Q  174 ttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aa 272  Q
    |||||||||||  |||| |||||||||| |||  |||  ||||||||| || ||||| ||| ||| ||||||||| |   |||||||||||||  || ||    
T  25447430 ttggataaacagtttatgtgcagcttataacacaagcgcttatcatgagaagcacttttgtgtaaactatttctatagtaaaagataaaataaacttaaa 25447331  T
Q  273 ttgttttcgtataagctatacgttgttttcacaagcgatcttg 315  Q
    ||||||| ||||||||||||   |||||||| |||| ||||||    
T  25447330 ttgtttttgtataagctataaactgttttcataagctatcttg 25447288  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 46030908 - 46030970
Alignment:
Q  210 catttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa 272  Q
    ||||||||||||||||||||||| ||||||||||||| | |   ||||||||||||| |||||    
T  46030908 catttatcatgataaacacttatatataagctatttcgatagaaaaagataaaataaagttaa 46030970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 20170470 - 20170575
Alignment:
Q  237 aagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggt 335  Q
    ||||||||| |||  | ||||||||||||| ||| ||||||||| ||||| |||||| |||||||| |||||  || || |||||| |||||||||| ||    
T  20170470 aagctatttttactgcaaaagataaaataatgttaaattgtttttgtatatgctataagttgtttttacaagttatttttgagaactaatgaaaataagt 20170569  T
Q  336 taaaaa 341  Q
    | ||||    
T  20170570 tgaaaa 20170575  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 21367649 - 21367710
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
    ||||||||||||||||  |||| |||||||||| |||| ||||||||||||  |||||||||    
T  21367649 aattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaata 21367710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 944362 - 944394
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||||||    
T  944362 tctgtttggataaacaacttatttgcagcttat 944394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 344
Target Start/End: Complemental strand, 39602341 - 39602225
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatga 327  Q
    |||||| |||||||||||||| |   |||||||| |||| ||||| |  || |||||||| |||| | |||||||| |||| ||||| ||||||  ||||    
T  39602341 cttatgcataagctatttctatagaaaaagataacataaagttaaattgttgcgtataagttataagctgttttcataagctatctttgagaacttatga 39602242  T
Q  328 aaataggttaaaaacaa 344  Q
    ||||| ||| |||||||    
T  39602241 aaataagttgaaaacaa 39602225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 849552 - 849583
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttat 201  Q
    ||||||||||||||||||||||||||||||||    
T  849552 ctgtttggataaacaacttatttgcagcttat 849583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 14145877 - 14145940
Alignment:
Q  255 aagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttgga 317  Q
    |||||||||||| ||||| ||||||||||||| |||||| ||| |||||| |||| ||||||||    
T  14145877 aagataaaataaagttaaattgttttcgtatatgctataagttattttcataagctatcttgga 14145940  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 34638112 - 34638034
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat--aaggttaattgttttcgtataagct 289  Q
    |||||||||||| | ||||| ||||||||||||||| |   |||||||||||  ||| | |||||||||||||||||||    
T  34638112 ttatcatgataaccgcttatatataagctatttctatagaaaaagataaaattaaagttaaattgttttcgtataagct 34638034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 292
Target Start/End: Complemental strand, 35328351 - 35328231
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttat-gacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    |||||||||||| | |||||||||||||||| ||||  |||  |||| ||||||| |||||||||| || ||||| ||| | | || ||||||  ||| |    
T  35328351 tgtttggataaatagcttatttgcagcttatagaca--agcgcttattatgataagcacttatgtacaacctattactatagcaaaggataaataaagtt 35328254  T
Q  270 taattgttttcgtataagctata 292  Q
     ||||||||||||||||| ||||    
T  35328253 aaattgttttcgtataagttata 35328231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 46886887 - 46886856
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttat 201  Q
    ||||||||||||||||||||||||||||||||    
T  46886887 ctgtttggataaacaacttatttgcagcttat 46886856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 52618946 - 52619029
Alignment:
Q  233 gtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttg 315  Q
    |||||||||||||||| | | || ||| |||||| ||||| |||||||| |||||| |||| | ||||||||||||| ||||||    
T  52618946 gtataagctatttctaaaacaaatgattaaataaagttaaattgttttcatataagttataagctgttttcacaagctatcttg 52619029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 53789661 - 53789590
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||| ||||| ||||| |||||||||||| ||  |||  |||||||||||| ||||||||| ||||||    
T  53789661 ctgtttgggtaaacgacttaattgcagcttatgccacaagcgcttatcatgataagcacttatgtgtaagct 53789590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 21865516 - 21865605
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggag 318  Q
    |||| |||||||||| ||||| | | |||||||||| ||||| ||| |||||| ||||||||||| |||||||| | |||| || ||||||    
T  21865516 cttaagtataagctagttctataacaaaagataaaacaaggtcaat-gttttcatataagctataagttgttttgataagctattttggag 21865605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 24085519 - 24085485
Alignment:
Q  166 ggctctgtttggataaacaacttatttgcagctta 200  Q
    ||||| |||||||||||||||||||||||||||||    
T  24085519 ggctccgtttggataaacaacttatttgcagctta 24085485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 31403281 - 31403371
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat-aaggttaattgttttcgtataagctatacgttgttttc 302  Q
    ||||||| |||| ||||||| ||||||||||||| | | | ||||||||||| ||| | || |||||||||||||| || | |||||||||    
T  31403281 ttatcatcataagcacttatatataagctatttccatatcaaaagataaaatgaagttaaaatgttttcgtataagatacaagttgttttc 31403371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 33405287 - 33405205
Alignment:
Q  240 ctatttctacaccgaaagataaaataaggttaatt-gttttcgtataagctatacgttgttttcacaagcgatcttggagaac 321  Q
    ||||||||| | | |||| |||||||| ||||||| |||||| ||||||||||| | |||||||| |||| |||||| |||||    
T  33405287 ctatttctatagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcataagctatcttgaagaac 33405205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 35959655 - 35959585
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||||||||| ||||||||||||||||  ||  |||  ||||||||||||   ||||||||||||||    
T  35959655 tgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataagagcttatgtataagct 35959585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 47132238 - 47132308
Alignment:
Q  161 actatggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacactta 231  Q
    |||| ||| ||||||||||||||||||||||| || |||||  ||  |||| |||||||||||| ||||||    
T  47132238 actaaggccctgtttggataaacaacttattttcaccttatagcacaagcacttatcatgataagcactta 47132308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 50709500 - 50709530
Alignment:
Q  213 ttatcatgataaacacttatgtataagctat 243  Q
    |||||||||||||||||||||||||||||||    
T  50709500 ttatcatgataaacacttatgtataagctat 50709530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 12704172 - 12704123
Alignment:
Q  194 cagcttatgacattagcatttatcatgataaacacttatgtataagctat 243  Q
    |||||||| |||  |||| |||||||||||||||||| ||||||||||||    
T  12704172 cagcttataacacaagcacttatcatgataaacacttgtgtataagctat 12704123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 50952255 - 50952335
Alignment:
Q  211 atttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctata 292  Q
    ||||| |||||||| | |||  |||||||||||||||| | | || |||||| ||| ||||||||||||| |||||||||||    
T  50952255 atttaccatgataagcgcttgagtataagctatttctataacaaaggataaa-taaagttaattgttttcatataagctata 50952335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 22203417 - 22203473
Alignment:
Q  276 ttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
    |||| |||||| ||||| |||||||||| |||| ||||||||||||  |||||||||    
T  22203417 tttttgtataatctataagttgttttcataagctatcttggagaacttatgaaaata 22203473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 34610993 - 34610941
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaa 225  Q
    |||||||||||||||||| |||||||||| |||  |||  |||||||||||||    
T  34610993 tttggataaacaacttatctgcagcttataacacaagcgcttatcatgataaa 34610941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 37389124 - 37389156
Alignment:
Q  213 ttatcatgataaacacttatgtataagctattt 245  Q
    |||||||||||| ||||||||||||||||||||    
T  37389124 ttatcatgataagcacttatgtataagctattt 37389156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 39602364 - 39602336
Alignment:
Q  174 ttggataaacaacttatttgcagcttatg 202  Q
    |||||||||||||||||||||||||||||    
T  39602364 ttggataaacaacttatttgcagcttatg 39602336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 44014211 - 44014283
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaa-taaggttaattgttttcgtataagctata 292  Q
    |||| ||||||||||||||||||||||| | | ||||||||||  ||| |||||| ||||||| |||| ||||    
T  44014211 ataaccacttatgtataagctatttctataactaaagataaaacaaagtttaatttttttcgtgtaagatata 44014283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 9956998 - 9956841
Alignment:
Q  174 ttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaat 273  Q
    |||||||||||||||||||| |||||||  ||  |||| ||||||||||| || ||||||| | ||||||||||| | | ||||||||||||| |||  |    
T  9956998 ttggataaacaacttatttgtagcttatagcacaagcacttatcatgatacacgcttatgtttgagctatttctataacaaaagataaaataaagtt-tt 9956900  T
Q  274 tgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
      ||||| |||||| |||| |||||||||| || | ||||||||||||  |||||||||    
T  9956899 atttttcctataagttataagttgttttcataatctatcttggagaacttatgaaaata 9956841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 34236028 - 34236145
Alignment:
Q  156 tatgaactatggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctac-accga 254  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| |||  | |  |||||||||||| | |||||| |||||| |||||||| ||  |    
T  34236028 tatgaactatggtcctgtttggataaacaacttatttgcagcttataacacaaacggttatcatgataagcccttatggataagcaatttctacaacaaa 34236127  T
Q  255 aagataaaataaggttaa 272  Q
    |||||||||||| |||||    
T  34236128 aagataaaataaagttaa 34236145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 10114428 - 10114532
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatga 327  Q
    ||||||||||||||||||||| | | |||||||||||||| | ||||||||| |||||||||||| | ||||||||  ||| || |||||||||  ||||    
T  10114428 cttatgtataagctatttctatagcaaaagataaaataagttgaattgttttggtataagctataagctgttttcattagctatattggagaacatatga 10114527  T
Q  328 aaata 332  Q
    |||||    
T  10114528 aaata 10114532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 170 - 308
Target Start/End: Complemental strand, 900887 - 900748
Alignment:
Q  170 ctgtttggataaacaact-tatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataagg 268  Q
    |||||||||||||||||| |||||||| |||||  ||  | |  ||||||||||||||||||||||| |||  |||| |  |  |||||||||||||| |    
T  900887 ctgtttggataaacaactatatttgcatcttatagcacaaacgcttatcatgataaacacttatgtaaaagtcatttgtgtagtgaaagataaaataaag 900788  T
Q  269 ttaattgttttcgtataagctatacgttgttttcacaagc 308  Q
    |||||  |||| |||||||||||| |||||||||| ||||    
T  900787 ttaatattttttgtataagctataagttgttttcataagc 900748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 41475248 - 41475133
Alignment:
Q  172 gtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaata-aggtt 270  Q
    |||||||||||||||||||||||| ||||| | |  | || || ||||||||| ||||||||||||||||| || || | | |||||||||||| || |     
T  41475248 gtttggataaacaacttatttgcaacttataagacaaacacttgtcatgataagcacttatgtataagctaattttatagcaaaagataaaatacagtta 41475149  T
Q  271 aattgttttcgtataa 286  Q
    ||||||||||||||||    
T  41475148 aattgttttcgtataa 41475133  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 26215376 - 26215478
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    ||||||| ||||||||||||||| ||||||||  ||  |||  |||| ||||||| | ||||||||||||||||||||| | | ||||||||||||| ||    
T  26215376 ctgtttgtataaacaacttattttcagcttatagcacgagcgcttataatgataagcgcttatgtataagctatttctataacaaaagataaaataaagt 26215475  T
Q  270 taa 272  Q
    |||    
T  26215476 taa 26215478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 16211038 - 16210942
Alignment:
Q  208 agcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtta-attgttttcgtataagctatacgttgttttca 303  Q
    |||| |||||||||||  |||| |||||||||||||||||| |   || |||||||||| |||| ||||||||| ||||||||||| ||||||||||    
T  16211038 agcacttatcatgatacgcactcatgtataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctataagttgttttca 16210942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 3537177 - 3537091
Alignment:
Q  214 tatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgtt 299  Q
    |||| |||||| ||||| ||||||||| ||||||| | | ||||||||||||| || || |||||||||||||||||||| ||||||    
T  3537177 tatcgtgataagcacttttgtataagcaatttctatagcaaaagataaaataaagtcaaattgttttcgtataagctataggttgtt 3537091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 14956494 - 14956424
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||||||||||||||||||||||||||  ||  | |  |||||||||||| ||||||||||||||||    
T  14956494 tgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtataagct 14956424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 37444567 - 37444485
Alignment:
Q  208 agcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagct 289  Q
    |||| |||||||||||| | ||||||||||||||||| ||| | | ||||||||| ||| ||| |||||||||||||||||||    
T  37444567 agcacttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaattgttttcgtataagct 37444485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 42597338 - 42597420
Alignment:
Q  227 acttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttcacaagc 308  Q
    |||||||||||||||||||||| | | ||||||||||||| ||  |||||||||| |  |||||||| |||||||||| ||||    
T  42597338 acttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataagc 42597420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 1112791 - 1112856
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    |||||||||| |||||||||| | | ||||||||||||||||| ||||||||||  ||||||||||    
T  1112791 cttatgtatatgctatttctataacaaaagataaaataaggttaaattgttttcacataagctata 1112856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 331
Target Start/End: Original strand, 7514516 - 7514620
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatg 326  Q
    ||||||||||||||||||||| | | |||  |||||||| ||| |||||||||| ||||||||| | | |||||||| |||| || ||| ||||| | ||    
T  7514516 cttatgtataagctatttctatagcaaaaactaaaataatgttcaattgttttcatataagctacaagctgttttcataagctattttgcagaactagtg 7514615  T
Q  327 aaaat 331  Q
    |||||    
T  7514616 aaaat 7514620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 24558835 - 24558883
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||| ||||||||||||||||| |||||||||| |||| ||||||||||    
T  24558835 aattattttcgtataagctataagttgttttcataagctatcttggaga 24558883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 29819081 - 29819049
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||||||    
T  29819081 tctgtttggataaacaacttatttgcagcttat 29819049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 10628267 - 10628204
Alignment:
Q  177 gataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagc 240  Q
    |||||| |||||||||||||||||| |||| ||   ||||||| |||||||||||| |||||||    
T  10628267 gataaaaaacttatttgcagcttataacataagtgcttatcataataaacacttatttataagc 10628204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 27752433 - 27752468
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacat 206  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27752433 tgtttggataaacaacttatttgcagcttataacat 27752468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 3936772 - 3936862
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaat-aaggttaattgttttcgtataagctatacgttgttttc 302  Q
    |||||||||||  ||||||||||||| ||||||||| | | || |||||||| ||| | |||||| ||| ||||||||||| | |||||||    
T  3936772 ttatcatgataggcacttatgtataatctatttctataacaaaggataaaataaagctaaattgtcttcctataagctataagctgttttc 3936862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 8216803 - 8216853
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaa 263  Q
    |||||||||||||||||||||||||||| |||| || | | ||||||||||    
T  8216803 ttatcatgataaacacttatgtataagccatttatataacaaaagataaaa 8216853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 18133556 - 18133586
Alignment:
Q  170 ctgtttggataaacaacttatttgcagctta 200  Q
    |||||||||||||||||||||||||||||||    
T  18133556 ctgtttggataaacaacttatttgcagctta 18133586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 35374493 - 35374440
Alignment:
Q  240 ctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    ||||||||| | ||||||||||||||| ||| |||||||||| |||||||||||    
T  35374493 ctatttctatagcgaaagataaaataaagttaaattgttttcatataagctata 35374440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 9834877 - 9834833
Alignment:
Q  271 aattgttttcgtataagctatacgttgttttcacaagcgatcttg 315  Q
    |||||||||| ||||||||||| |||||||||| |||| ||||||    
T  9834877 aattgttttcatataagctataagttgttttcataagctatcttg 9834833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 16163417 - 16163345
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaa-taaggttaattgttttcgtataagctata 292  Q
    |||| ||||||||||||||||||||||| | | ||||||||||  ||| |||||| ||||||| |||| ||||    
T  16163417 ataaccacttatgtataagctatttctataactaaagataaaacaaagtttaatttttttcgtgtaagatata 16163345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 22790501 - 22790541
Alignment:
Q  161 actatggctctgtttggataaacaacttatttgcagcttat 201  Q
    |||||||  ||||||||||||||||||||||| ||||||||    
T  22790501 actatggacctgtttggataaacaacttatttacagcttat 22790541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 36963546 - 36963474
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    ||||||||| ||||||| |||||||||||||||  ||  |||  |||||||||||||| |||| | |||||||    
T  36963546 tctgtttgggtaaacaatttatttgcagcttatagcacaagcgcttatcatgataaacgcttacggataagct 36963474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 47177517 - 47177667
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt 270  Q
    |||||||||||||||||||||||| | ||||  ||| |||| |||| ||||||| | ||| |||||||| |||||||| | | ||| | |||| || |||    
T  47177517 tgtttggataaacaacttatttgctgattatagcataagcacttatgatgataagcccttctgtataaggtatttctatatcaaaatacaaaacaaagtt 47177616  T
Q  271 -aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
     |||||||||| ||||||||||| | |||||||| |||| |||||||||||    
T  47177617 aaattgttttcatataagctataagctgttttcaaaagctatcttggagaa 47177667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 169 - 291
Target Start/End: Complemental strand, 43250871 - 43250747
Alignment:
Q  169 tctgtttggataaacaactt-atttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataag 267  Q
    |||||||||||||||||||| |||||||||| ||  | | |||| ||| |||||||| |  ||||||||||||||| |||| | | |||||||||||||     
T  43250871 tctgtttggataaacaactttatttgcagctgatagcttaagcacttaccatgataagcctttatgtataagctatgtctagaacaaaagataaaataaa 43250772  T
Q  268 gttaattg-ttttcgtataagctat 291  Q
    |||||||| ||||||||||||||||    
T  43250771 gttaattgtttttcgtataagctat 43250747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 47795838 - 47795958
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt 270  Q
    ||||| |||||||| ||||||||||||||||  ||| |||  |||||||||||| ||||||||||||| ||||||||| | | |||| |||| |||| |     
T  47795838 tgtttagataaacagcttatttgcagcttatagcataagcgcttatcatgataaccacttatgtataacctatttctatatcaaaag-taaattaagtta 47795936  T
Q  271 aattgttttcgtataagctata 292  Q
    |||||||||  |||||||||||    
T  47795937 aattgtttttatataagctata 47795958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 19718887 - 19719021
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta-caccgaaagataaaataagg 268  Q
    |||||||||| |  |||||| ||||||||||| |||  |||| |||||||||||||||||| ||| |||||||||||||  ||  ||| ||||||| | |    
T  19718887 ctgtttggatgagaaacttaattgcagcttataacacaagcacttatcatgataaacacttgtgtgtaagctatttctataacataaaaataaaatcaag 19718986  T
Q  269 ttaattgttttcgtataagctatacgttgttttca 303  Q
    ||||||||||| ||| | | |||| ||||||||||    
T  19718987 ttaattgtttttgtaaatgttataagttgttttca 19719021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 33553007 - 33552933
Alignment:
Q  174 ttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||||||||||||||||||||||||||  ||  |||| ||| |||||||| | |||||||||||||||||||||    
T  33553007 ttggataaacaacttatttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagctatttcta 33552933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 320
Target Start/End: Original strand, 33672958 - 33673108
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    |||||||||||||| | |||||||||||||||  ||  || |||||| ||||||| | ||||||||||||||| ||||| | | || ||||||||||  |    
T  33672958 ctgtttggataaactatttatttgcagcttatagcacaagtatttattatgataagcgcttatgtataagctacttctatagcaaaggataaaataactt 33673057  T
Q  270 taattgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
     |||| | || |||||||||||| | ||||| || |||| || ||||||||    
T  33673058 aaattatatttgtataagctataagctgtttccataagctatattggagaa 33673108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 3610872 - 3610797
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaat-aaggttaattgttttcgtataagctatacgttgttttc 302  Q
    ||||||||||||||||||||||| | ||||||||||| ||||  || |||||| |||||||||||| |||||||||    
T  3610872 cttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctataagttgttttc 3610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 332
Target Start/End: Complemental strand, 20881825 - 20881663
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaa-taaggt 269  Q
    ||||| ||| ||||||||||||| || ||||  ||  |||| |||||||||||| | ||||||||| |||||| |||| | | ||||||||||  ||| |    
T  20881825 tgtttagatgaacaacttatttgtagtttatagcacaagcacttatcatgataagctcttatgtatgagctatatctatagcaaaagataaaacgaagtt 20881726  T
Q  270 taattgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaata 332  Q
     |||||||| |||| |||||||| |||||||||| || | |||||  |||||  |||||||||    
T  20881725 aaattgtttccgtacaagctataagttgttttcataaactatcttaaagaacttatgaaaata 20881663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 21568831 - 21568757
Alignment:
Q  167 gctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||||||||||||| ||| ||||||||||||  ||| ||   |||||||||||| ||||||||||||||||    
T  21568831 gctctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtataagct 21568757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 36517481 - 36517539
Alignment:
Q  166 ggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataa 224  Q
    ||||||||||| |||||||||||||||||| ||||| ||| ||||| ||||||||||||    
T  36517481 ggctctgtttgaataaacaacttatttgcaacttataacactagcacttatcatgataa 36517539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 28900760 - 28900821
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgt 234  Q
    ||||||||||||||||||||||||||||| |||  ||||||||| ||||||| | |||||||    
T  28900760 tttggataaacaacttatttgcagcttataacacaagcatttattatgataagcgcttatgt 28900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 45813312 - 45813235
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcac 304  Q
    ||||| ||||||||||||||| ||| ||||||||||||| || || |||||||| ||||| ||||| |||||||||||    
T  45813312 cttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttcac 45813235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 39907734 - 39907846
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||| |||||||||||||| ||||||  || | |||  |||||||||||||| ||||||| ||||||||||||   |||||||| || | ||||| ||||    
T  39907734 ataagcacttatgtataagatatttcctcagcaaaaagtaaaataaggttaaattgtttttgtataagctataaactgttttcataaactatcttagaga 39907833  T
Q  320 acgaatgaaaata 332  Q
    || ||||||||||    
T  39907834 actaatgaaaata 39907846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 30133988 - 30134067
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaag 307  Q
    ||||||||||||||||| |||| | ||||||||||||| || || ||||||||||||||||| || | || |||||||||    
T  30133988 ttatgtataagctatttttacaacaaaagataaaataaagtcaacttgttttcgtataagctttaagctgatttcacaag 30134067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 46139822 - 46139897
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    |||||||| ||||||||||||||||||||||| |||  |||| ||||||||||||    |||| ||||||||||||    
T  46139822 ctgtttggttaaacaacttatttgcagcttataacacaagcacttatcatgataagtgattatctataagctattt 46139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 33894561 - 33894639
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaa 306  Q
    ||||||||||||||||||||| | | ||||||||||||||   || ||||||| |||||||| || |||||||| ||||    
T  33894561 cttatgtataagctatttctataacaaaagataaaataagtcaaactgttttcatataagctttatgttgtttttacaa 33894639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 39967884 - 39967974
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggagaacgaatgaaaataggttaaaaaca 343  Q
    |||||||||||||  |||| |||||||||||  ||||||| |||||||||| |||| ||||  |||||| |||||||||| ||| ||||||    
T  39967884 aaagataaaataaacttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaaca 39967974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 44241800 - 44241885
Alignment:
Q  230 tatgtataagctatttctacaccgaaagataaaataaggttaattgttttcgtataagctatacgttgttttcacaagcgatcttg 315  Q
    |||||||||| |||||||| | | | ||||||||||| ||||| | |||| |||||| ||||| |||||||||| |||| ||||||    
T  44241800 tatgtataagttatttctataacaacagataaaataaagttaactatttttgtataacctataagttgttttcataagctatcttg 44241885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 7612346 - 7612414
Alignment:
Q  178 ataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    |||||||||||| ||||||||||||  ||| |||| |||||||||||| | | ||||||||||||||||    
T  7612346 ataaacaacttaatttgcagcttatagcataagcacttatcatgataagctcatatgtataagctattt 7612414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 12110291 - 12110403
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    |||| |||||||| |||| |||||||||   |  |||||||||||| || || ||||||| |||||||||||| | |||||||| |||| |||||| |||    
T  12110291 ataagcacttatgaataacctatttctattacacaagataaaataaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaaga 12110390  T
Q  320 acgaatgaaaata 332  Q
    ||  |||||||||    
T  12110391 acttatgaaaata 12110403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 28210325 - 28210357
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatg 202  Q
    |||||||||||||||||||||||||||||||||    
T  28210325 ctgtttggataaacaacttatttgcagcttatg 28210357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 40378028 - 40377996
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatg 202  Q
    |||||||||||||||||||||||||||||||||    
T  40378028 ctgtttggataaacaacttatttgcagcttatg 40377996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 30496643 - 30496718
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttca 303  Q
    |||||||||| ||||||||| | | ||| ||||||||| || || |||||||||||||| ||||| ||||||||||    
T  30496643 ttatgtataaactatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttca 30496718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 18865249 - 18865219
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||||    
T  18865249 tgtttggataaacaacttatttgcagcttat 18865219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 21619295 - 21619365
Alignment:
Q  178 ataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttcta 248  Q
    ||||||| || |||||||||||||  ||  |||| |||||||||||| ||||||| | |||||||||||||    
T  21619295 ataaacatctaatttgcagcttatagcacaagcacttatcatgataagcacttatctctaagctatttcta 21619365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 27548201 - 27548291
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttcacaagcgatcttgga 317  Q
    ||||| |||||||||||||   | | ||||||||||||| || ||||||||||| | ||||||||| | |||||||| |||| ||||||||    
T  27548201 cttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcataagctatcttgga 27548291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 36874104 - 36874022
Alignment:
Q  221 ataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttc 302  Q
    |||| ||||||||||||||||||||||| |   || ||||||||||  || |||| ||||| ||||||||||| |||||||||    
T  36874104 ataagcacttatgtataagctatttctataagaaatgataaaataaatttgaattattttcttataagctataagttgttttc 36874022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 30179954 - 30179987
Alignment:
Q  166 ggctctgtttggataaacaacttatttgcagctt 199  Q
    ||||||||||||||||||||||| ||||||||||    
T  30179954 ggctctgtttggataaacaacttctttgcagctt 30179987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 32714302 - 32714375
Alignment:
Q  171 tgtttggataaacaactta-tttgcagcttatgacattagcatttatcatgataaacacttatgtataagctat 243  Q
    |||| |||||||||||||| ||| || ||||| | || | ||||||||||||||| | ||||||||||||||||    
T  32714302 tgttcggataaacaacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagctat 32714375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 1417203 - 1417283
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttcacaagc 308  Q
    |||||||||| |||||| || | | ||||||||||||| ||  |||||||||| ||||||| ||| |||||||||| ||||    
T  1417203 ttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataagc 1417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 11619387 - 11619355
Alignment:
Q  169 tctgtttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||| ||||    
T  11619387 tctgtttggataaacaacttatttgcagattat 11619355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 30180015 - 30180063
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgtttt 301  Q
    ||||||||||||| ||||| |||||||||||||||||||| | ||||||    
T  30180015 aaagataaaataaagttaaattgttttcgtataagctataagctgtttt 30180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 45263954 - 45263994
Alignment:
Q  161 actatggctctgtttggataaacaacttatttgcagcttat 201  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  45263954 actatgggcctgtttggataaacaacttatttgcggcttat 45263994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 9093703 - 9093594
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgat 311  Q
    |||||||||||| | |||||| |||||||||||||| | | ||||||||||||| ||| |||||||||||||||||||||| | |||||||| ||||  |    
T  9093703 ttatcatgataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagctgt 9093604  T
Q  312 cttggagaac 321  Q
    ||| ||||||    
T  9093603 cttagagaac 9093594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 430574 - 430488
Alignment:
Q  163 tatggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgat-aaacacttatgtataagctatttcta 248  Q
    ||||| ||||| || |||||||||||||||||||||||| |||| | || | |||||||| ||| ||||||||||||||||||||||    
T  430574 tatgggtctgtctgtataaacaacttatttgcagcttataacataaacactcatcatgatgaaaaacttatgtataagctatttcta 430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 20671996 - 20671921
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttca 303  Q
    |||||||||||||||||||| | | ||||||||||||| ||  ||||||||||||||||||| ||  |||||||||    
T  20671996 ttatgtataagctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagctttaaattgttttca 20671921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 35069432 - 35069507
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctattt 245  Q
    |||||| |||||||||||||||||||||||||  ||  ||| |||||||||||||   |||||| |||||||||||    
T  35069432 ctgttttgataaacaacttatttgcagcttatagcacaagcgtttatcatgataagtgcttatgcataagctattt 35069507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 264251 - 264373
Alignment:
Q  170 ctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggt 269  Q
    |||||||||| |||| || |||||||||||||  ||  ||   ||||||||||||   ||||| ||||||||||||||| | | ||||||||||||| ||    
T  264251 ctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagctatttctaaagcaaaagataaaataaagt 264350  T
Q  270 t-aattgttttcgtataagctat 291  Q
    | ||| |||||||| ||||||||    
T  264351 taaatcgttttcgtctaagctat 264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 24476530 - 24476576
Alignment:
Q  218 atgataaacacttatgtataagctatttctacaccgaaagataaaat 264  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||    
T  24476530 atgataaacacttatgtataagctatttctatagcaaaagataaaat 24476576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 10016483 - 10016576
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggagaa 320  Q
    ||||||||||||||||||||| ||| |||||||||||||  || || |||| || ||||||| ||| | |||||||| |||| || ||||||||    
T  10016483 cttatgtataagctatttctaaaccaaaagataaaataaatttaaactgttctcatataagccataagctgttttcataagctatgttggagaa 10016576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 29274361 - 29274296
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctata 292  Q
    ||||||||||||||||||||| | | ||||||||||||| ||  |||||||||| |||||||||||    
T  29274361 cttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctata 29274296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 31624191 - 31624260
Alignment:
Q  223 aaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctat 291  Q
    |||| ||| ||||||||||||||||| | | |||||||||||||| || |||||||||||||||| ||||    
T  31624191 aaacgcttgtgtataagctatttctataacaaaagataaaataagtttaaattgttttcgtataatctat 31624260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 6538378 - 6538458
Alignment:
Q  161 actatggctctgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagct 241  Q
    |||||||  ||||||||||||| | ||||||||||||||||  ||  |||| |||| ||||||| | ||||||||||||||    
T  6538378 actatgggcctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgataagcgcttatgtataagct 6538458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 847941 - 848008
Alignment:
Q  173 tttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagc 240  Q
    |||||||||||||||| |||||||||||| | |  |||| ||||||| |||| | |||||||||||||    
T  847941 tttggataaacaacttttttgcagcttataagacaagcagttatcataataagcgcttatgtataagc 848008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 9632777 - 9632812
Alignment:
Q  166 ggctctgtttggataaacaacttatttgcagcttat 201  Q
    ||||||| ||||||||||||||||||||||||||||    
T  9632777 ggctctgattggataaacaacttatttgcagcttat 9632812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 12631550 - 12631623
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtta-attgttttcgtataagctatacgttgttttca 303  Q
    ||||||||||||||||||||| | | ||||||||||||   ||| ||||||||| |||||||| || ||||||||||    
T  12631550 cttatgtataagctatttctataaccaaagataaaata---ttagattgttttcctataagctgtaagttgttttca 12631623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 32386669 - 32386619
Alignment:
Q  254 aaagataaaataaggttaa-ttgttttcgtataagctatacgttgttttca 303  Q
    |||||||||||||||| || |||||||| |||||| |||||||||||||||    
T  32386669 aaagataaaataaggtcaaattgttttcatataaggtatacgttgttttca 32386619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 283
Target Start/End: Complemental strand, 9559730 - 9559617
Alignment:
Q  171 tgtttggataaacaacttatttgcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt 270  Q
    |||||| ||||||||| ||||||||| ||||  |   ||  ||||||| ||||| | |||||||||||| |||||||| | | |||||||||||||  ||    
T  9559730 tgtttgcataaacaacctatttgcagtttatagctcaagagtttatcaagataagcgcttatgtataagttatttctatagcaaaagataaaataaattt 9559631  T
Q  271 -aattgttttcgta 283  Q
     |||||||||||||    
T  9559630 aaattgttttcgta 9559617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 507158 - 507222
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggtta-attgttttcgtataagctat 291  Q
    |||||||||||  |||||||| | | ||||||||||||| |||| |||||||| |||||||||||    
T  507158 cttatgtataaattatttctataacaaaagataaaataaagttagattgtttttgtataagctat 507222  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 1402942 - 1403026
Alignment:
Q  236 taagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctatacgttgttttcacaagcgatcttggaga 319  Q
    ||||||||||||| | | ||||||||||||| ||| || | ||||| |||||||||||  ||||||||| |||| ||| ||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggaga 1403026  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 10645516 - 10645488
Alignment:
Q  173 tttggataaacaacttatttgcagcttat 201  Q
    |||||||||||||||||||||||||||||    
T  10645516 tttggataaacaacttatttgcagcttat 10645488  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 24836330 - 24836266
Alignment:
Q  229 ttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctata 292  Q
    ||||||||||| |||||||| | | ||||||||||||| ||  |||||||||||||||| |||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactata 24836266  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 32206167 - 32206087
Alignment:
Q  213 ttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagctata 292  Q
    |||||||||||| ||||||||| |||||||| ||||   | |||||| |||||| ||| |||| |||| ||||||||||||    
T  32206167 ttatcatgataagcacttatgtgtaagctatctctatgacaaaagatgaaataaagttaaattattttagtataagctata 32206087  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 21421 - 21348
Alignment:
Q  217 catgataaacacttatgtataagctatttctacaccgaaagataaaataaggtt-aattgttttcgtataagct 289  Q
    |||||||| |||||||||||||||||||| || |   ||||||||||||| ||| |||||||||||||||||||    
T  21421 catgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagct 21348  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 58854 - 58937
Alignment:
Q  207 tagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggttaa-ttgttttcgtataagct 289  Q
    ||||| |||||||||| | ||||||||| |||||||||| || |   |||| |||||||| ||||| |||||||||||||||||    
T  58854 tagcacttatcatgatcagcacttatgtgtaagctatttttataggaaaagttaaaataaagttaaattgttttcgtataagct 58937  T

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Target: scaffold0024; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 27514 - 27603
Alignment:
Q  228 cttatgtataagctatttctacaccgaaagataaaataaggt-taattgttttcgtataagctatacgttgttttcacaagcgatcttgg 316  Q
    |||||||||||| |||||||| | |  |||||||||||| ||  |||||||||| ||||| ||||| |||||||||| || | |||||||    
T  27514 cttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaactatcttgg 27603  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 104301 - 104223
Alignment:
Q  193 gcagcttatgacattagcatttatcatgataaacacttatgtataagctatttctacaccgaaagataaaataaggtta 271  Q
    ||||||||| |||| ||| |||  |||||||||| |||||||||||| |||||||| | | ||| ||||||||| ||||    
T  104301 gcagcttataacataagcgttttacatgataaacgcttatgtataagttatttctataacaaaaaataaaataatgtta 104223  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 58475 - 58504
Alignment:
Q  171 tgtttggataaacaacttatttgcagctta 200  Q
    ||||||||||||||||||||||||||||||    
T  58475 tgtttggataaacaacttatttgcagctta 58504  T

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