View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_high_70 (Length: 254)

Name: NF3114_high_70
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_high_70
NF3114_high_70
[»] chr2 (3 HSPs)
chr2 (1-248)||(8019974-8020221)
chr2 (2-79)||(22391343-22391420)
chr2 (176-234)||(22391574-22391632)
[»] chr3 (30 HSPs)
chr3 (1-98)||(27975565-27975662)
chr3 (1-98)||(28132163-28132260)
chr3 (1-98)||(28510616-28510713)
chr3 (1-98)||(28053688-28053785)
chr3 (1-98)||(28064113-28064210)
chr3 (1-98)||(28147947-28148044)
chr3 (1-98)||(28183980-28184077)
chr3 (1-95)||(28002391-28002485)
chr3 (17-98)||(28481444-28481525)
chr3 (1-98)||(28081956-28082053)
chr3 (9-98)||(28159424-28159513)
chr3 (20-98)||(28035660-28035738)
chr3 (11-98)||(27460990-27461077)
chr3 (1-98)||(27918585-27918682)
chr3 (174-236)||(28159634-28159696)
chr3 (167-237)||(28148170-28148242)
chr3 (175-236)||(28184199-28184260)
chr3 (100-227)||(28035806-28035932)
chr3 (9-98)||(11418952-11419041)
chr3 (1-45)||(17746167-17746211)
chr3 (1-45)||(19047487-19047531)
chr3 (172-232)||(28481226-28481286)
chr3 (172-232)||(28510407-28510467)
chr3 (169-236)||(28053934-28054000)
chr3 (169-236)||(28064359-28064425)
chr3 (176-232)||(28082191-28082247)
chr3 (97-227)||(28002553-28002682)
chr3 (1-38)||(12146237-12146274)
chr3 (1-45)||(27392230-27392274)
chr3 (173-237)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (1-98)||(17542-17639)
scaffold0257 (97-133)||(17704-17740)
scaffold0257 (168-200)||(17766-17798)
[»] chr7 (2 HSPs)
chr7 (172-237)||(8693152-8693216)
chr7 (1-98)||(8693277-8693374)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-79)||(54687-54765)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 8019974 - 8020221
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019974 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaa 8020073  T
Q  101 ctatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020074 ctatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatattttt 8020173  T
Q  201 aaaaactattacacgttggctgtaaataattacatattcttggacatc 248  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  8020174 aaaaactattacacgttggctgtaaataattacatattattgcacatc 8020221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 22391343 - 22391420
Alignment:
Q  2 gaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgta 79  Q
    ||||||||| |||||||||||||||||||| ||||||  | |||||| |||||  | || |||||||| |||||||||    
T  22391343 gaagcatataagctagaggaaatatttgtatgtgaagaaggtgatcagaaagtcaatatgccaaatctaaaagttgta 22391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 22391574 - 22391632
Alignment:
Q  176 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattaca 234  Q
    |||||||||| | | |||||||||| ||| |||||||| ||||||||||| ||||||||    
T  22391574 ggtacacactttgtccaatatttttgaaatctattacatgttggctgtaattaattaca 22391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27975565 - 27975662
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27975565 agaagcagctgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgatagttgtaatatttgaaaatctaccaa 27975662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28132163 - 28132260
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132163 agaagcagacgagttagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 28132260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28510713 - 28510616
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28510713 agaagcagatgagttagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28510616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28053688 - 28053785
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  28053688 agaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctaccaa 28053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28064113 - 28064210
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  28064113 agaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctaccaa 28064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28147947 - 28148044
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28147947 agaagcagatgagttagaggaaatatttgtaagtgaatttgatgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28183980 - 28184077
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||| ||||||||||||||||||    
T  28183980 agaagcagatgagctggaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 28002391 - 28002485
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 95  Q
    ||||||| | ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||    
T  28002391 agaagcagacgaggtagaggaaatatttggaagtgaaggtgatgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctac 28002485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 28481525 - 28481444
Alignment:
Q  17 gaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  28481525 gaggaaatatttggaagtgaaggtgatgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctaccaa 28481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28081956 - 28082053
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||   | ||||| ||||||||||||| ||||    
T  28081956 agaagcagatgagttagaggaaatatttgtaagcgaaggtgatgatcacaaagtggagattccatatctacgatttgtagtatttgaaaatcttccaa 28082053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 28159424 - 28159513
Alignment:
Q  9 atgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||  ||  |||| ||||||||||||||||||    
T  28159424 atgagctagaggaaatatttgtaattgaaggtgatgatcagaaagtgaagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28159513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 28035660 - 28035738
Alignment:
Q  20 gaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||| | ||||||||||||||||    
T  28035660 gaaatatttgcaagtgaaggtgatgatcagaaagtggagattccaaatctaaaatttgtagtgtttgaaaatctaccaa 28035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 27461077 - 27460990
Alignment:
Q  11 gagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    |||||||||||||||||||||||||||   |||||||| ||| |||||||||||||||| ||| ||||| |||||| |||||||||||    
T  27461077 gagctagaggaaatatttgtaagtgaaaaagatgatcagaaactggagattccaaatctaaaacttgtagtatttgtaaatctaccaa 27460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27918585 - 27918682
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||||| || |||||||||| || ||||||||||||||| ||||||||||||||||||||  ||  | || ||||||||||||||||||    
T  27918585 agaagcagatgagctggatgaaatatttgcaaatgaaggtgatgatcagaaagtggagattccaaatctagaatatctagtatttgaaaatctaccaa 27918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 28159634 - 28159696
Alignment:
Q  174 acggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 236  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28159634 acggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28159696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 28148170 - 28148242
Alignment:
Q  167 tttggctacggtacacactctatacaatat--ttttaaaaactattacacgttggctgtaaataattacatat 237  Q
    ||||||||||||||| ||||||| ||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  28148170 tttggctacggtacagactctatccaatatatttttaaaaactattacatgttggccgtaaataattacatat 28148242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 28184199 - 28184260
Alignment:
Q  175 cggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 236  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28184199 cggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28184260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 28035806 - 28035932
Alignment:
Q  100 actatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatatttt 199  Q
    |||||| ||||||||| |||||||| || ||||   |  |||||||  |||||||||| || || |||||| ||||||||| |||||||| |||||||||    
T  28035806 actatctctggcttcatcatcaacaacaaactttgaaaatgatatttctggtttatattctggcgagtttgactacggtacgcactctatccaatatttt 28035905  T
Q  200 taaaaactattacacgttggctgtaaat 227  Q
    | |||||||||| | |||||||||||||    
T  28035906 t-aaaactattaaatgttggctgtaaat 28035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 11418952 - 11419041
Alignment:
Q  9 atgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    |||||||||||||||||||||||||||||| |||| |||| |||   |||||||| ||||| ||| || || ||||||||||||| ||||    
T  11418952 atgagctagaggaaatatttgtaagtgaagatgatcatcagaaaagcgagattccgaatcttaaatttttagtatttgaaaatctgccaa 11419041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17746211 - 17746167
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  17746211 agaagcatatgagctagaggaaatatttggaagtgaaggtgatga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19047531 - 19047487
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  19047531 agaagcatatgagctagaggaaatatttggaagtgaaggtgatga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 28481286 - 28481226
Alignment:
Q  172 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 232  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28481286 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 28510467 - 28510407
Alignment:
Q  172 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 232  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28510467 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 28053934 - 28054000
Alignment:
Q  169 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 236  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28053934 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28054000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 28064359 - 28064425
Alignment:
Q  169 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 236  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28064359 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28064425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 28082191 - 28082247
Alignment:
Q  176 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 232  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  28082191 ggtacacattctatccaatatttttaaaaactattacatgttgactgtaaattatta 28082247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 227
Target Start/End: Original strand, 28002553 - 28002682
Alignment:
Q  97 aaaactatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatat 196  Q
    ||||||||| ||| |||||||||||||||||||||||  |  |||||||  |||||||  | |   |  ||||| | | |||||||||||||| ||||||    
T  28002553 aaaactatctctgacttcagcatcaacagcagacttcgaaaatgatatttctggtttacgttcggtctggtttgacgagggtacacactctatccaatat 28002652  T
Q  197 ttttaaaaactattacacgttggctgtaaat 227  Q
    |||| |||||||||| | |||||||||||||    
T  28002653 tttt-aaaactattaaatgttggctgtaaat 28002682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12146237 - 12146274
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaag 38  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  12146237 agaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27392274 - 27392230
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 45  Q
    ||||||| ||||||||||||||||||||||| | |||| ||||||    
T  27392274 agaagcagatgagctagaggaaatatttgtatgcgaagttgatga 27392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 27460864 - 27460800
Alignment:
Q  173 tacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 237  Q
    ||||||||||||||||| |||| ||| | ||||  |||||| |||||||||||||| || |||||    
T  27460864 tacggtacacactctatccaatctttctgaaaatcattacatgttggctgtaaatatttgcatat 27460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 17542 - 17639
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  17542 agaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatcacaaaatggagattccaaatctaaaatttgtagtatttgaaaatctaccaa 17639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 17704 - 17740
Alignment:
Q  97 aaaactatccctggcttcagcatcaacagcagacttc 133  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  17704 aaaactatctctggcttcagcatcaacaccagacttc 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 17766 - 17798
Alignment:
Q  168 ttggctacggtacacactctatacaatattttt 200  Q
    |||||||||||||||||||||| ||||||||||    
T  17766 ttggctacggtacacactctatccaatattttt 17798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 8693216 - 8693152
Alignment:
Q  172 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 237  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  8693216 ctacggtacacactctatccaatattttttaaa-ctattacacgttggctgtaaataattacatat 8693152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8693374 - 8693277
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 98  Q
    ||||||| ||||||| || |||||||||| ||||||||||  |||| | ||||| ||||||||||||||  ||  |||| ||||||||||||| ||||    
T  8693374 agaagcagatgagctggatgaaatatttgcaagtgaaggtcgtgatgagaaagtcgagattccaaatctagaatatgtagtatttgaaaatcttccaa 8693277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 54765 - 54687
Alignment:
Q  1 agaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgta 79  Q
    ||||||| ||||||||||||||||||||||| ||||||  | |||||| |||||  |  ||||||||||||||||||||    
T  54765 agaagcacatgagctagaggaaatatttgtatgtgaagaaggtgatcagaaagtcaatcttccaaatctgaaagttgta 54687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University