View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_75 (Length: 251)
Name: NF3114_high_75
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 39170794 - 39170570
Alignment:
| Q |
18 |
atttttaggttatgtttatttatttgaatacacacatagtgctgctgctgactatagtatagaaaatgtggagatgcatgttgaggacatcatcctattc |
117 |
Q |
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| T |
39170794 |
atttttaggtt--gtttatttatttgaatacacacatagtgctgctgctgactatagtatagaaaatgtggagatgcatgttgaggacatcatcctattc |
39170697 |
T |
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| Q |
118 |
gatcggtttaggttttagcaggtctgccactaataaggacaattttccaaataaagagatcatgtgttagaggcaactaaattataagcaattcagatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39170696 |
gatcggtttaggttttagcaggtctgccactaataaagacaattttccaaataaagagatcatgtgtcagaggcaactaaattataagcaattcagatta |
39170597 |
T |
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| Q |
218 |
gtcccttccttattttgatattcttcg |
244 |
Q |
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||| |||||||||||||||||| |||| |
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| T |
39170596 |
gtctcttccttattttgatattgttcg |
39170570 |
T |
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