View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_76 (Length: 251)
Name: NF3114_high_76
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_76 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 2709280 - 2709526
Alignment:
| Q |
5 |
taggagcacagataccataaacatcacaatcattttgttgaactacccgcttccgaacttgaatcatattgatccaggcagtgtacataagcttgccttc |
104 |
Q |
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| T |
2709280 |
taggaccacaaataccataaacatcacaatcattttgttgaactacccgcttccgaacttgaatcatattgatccaggcagtgtacacaagcttgccttc |
2709379 |
T |
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| Q |
105 |
agaactcaatacaatggttgcaaagaaggaactgtttggcaatgtatatgtaatctcaacaagacttccattatcttcccttctaacgataaatcctttt |
204 |
Q |
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| T |
2709380 |
agaactcaatacaatggttgcaaagaaggaactgtttggcaatgtatatgtaatctcaacaagacttccattatcttcccttctaatgataaaccctttt |
2709479 |
T |
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| Q |
205 |
agatttgccgaagtaggcaaaaaactacttggcaaaccaagaaaatc |
251 |
Q |
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| T |
2709480 |
agatttgcagaagtaggcaaccaattacttgccaaaccaagaaaatc |
2709526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 2714315 - 2714496
Alignment:
| Q |
5 |
taggagcacagataccataaacatcacaatcattttgttgaactacccgcttccgaacttgaatcatattgatccaggcagtgtacataagcttgccttc |
104 |
Q |
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| T |
2714315 |
taggaccacaaataccataagaatcacaatcatttgattgaacaaacagcttccgaacttgaaccctattcatccatgcagtatacactaccttgccttc |
2714414 |
T |
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| Q |
105 |
agaactcaatacaatggttgcaaagaaggaactgtttggcaatgtatatgtaatctcaacaagacttccattatcttccctt |
186 |
Q |
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| T |
2714415 |
agaactcagtacaagggttaaaaagaatgaactatctggcaatgtatatgtaaactcaacaagacttccattatctttcctt |
2714496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 2747219 - 2747334
Alignment:
| Q |
71 |
tattgatccaggcagtgtacataagcttgccttcagaactcaatacaatggttgcaaagaaggaactgtttggcaatgtatatgtaatctcaacaagact |
170 |
Q |
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| T |
2747219 |
tattcatccatgaagtgtaaatcagcttgccttcagaattcaccacagcagttgcaaaaaaagaactatttagcagtgtatacgtagtctcaacaagact |
2747318 |
T |
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| Q |
171 |
tccattatcttccctt |
186 |
Q |
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| T |
2747319 |
tccattatctttcctt |
2747334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 2725789 - 2725854
Alignment:
| Q |
122 |
ttgcaaagaaggaactgtttggcaatgtatatgtaatctcaacaagacttccattatcttcccttc |
187 |
Q |
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| T |
2725789 |
ttgcaaagaaagaactgttcagcagtgtataggtagtctcaacaatacttccattatctttccttc |
2725854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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