View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_83 (Length: 248)
Name: NF3114_high_83
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_83 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 78 - 248
Target Start/End: Complemental strand, 13440532 - 13440363
Alignment:
| Q |
78 |
ataaaacttgattcatggaaccaaacttgcatatttttatatacatgattgtactcaagtgccattagcttagtgtcttttcaattttcttatagtaaat |
177 |
Q |
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| T |
13440532 |
ataaaacttgaatcatggaaccaaacttgcatatttttatatacatgattgtactcaagtgccattagcttagtgtcttttcaattttcttatagt-aat |
13440434 |
T |
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| Q |
178 |
tccaaattcaagtgtatgcttgtgtttcaacttgaaagttagttgagtgatcaattaatagctctcaactc |
248 |
Q |
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| T |
13440433 |
tccaaattcaagtgtatgcttgtgtttcaacttgaaagttagttgagtgatcaattaatagctctcaactc |
13440363 |
T |
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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 13440813 - 13440757
Alignment:
| Q |
15 |
gaaagatgtggaaaaatgggatgaatatttgaagaaatactccaggaagtactatag |
71 |
Q |
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| T |
13440813 |
gaaagatgtggagaaatgggatgaatatttgaagaaatactccaggaagtactatag |
13440757 |
T |
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