View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_85 (Length: 245)
Name: NF3114_high_85
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_85 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12417286 - 12417047
Alignment:
| Q |
1 |
ttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaatcaaat |
100 |
Q |
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| T |
12417286 |
ttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaataagaaatgattcattgaaatcaaat |
12417187 |
T |
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| Q |
101 |
aaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttattgttaacaattc |
200 |
Q |
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| T |
12417186 |
aaatttcaatgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttattgttaacaattc |
12417087 |
T |
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| Q |
201 |
gatgtcaacaaatttttataccattcagcactagcctttg |
240 |
Q |
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| T |
12417086 |
gatgtcaacaaatttttataccattcagcactagcctttg |
12417047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 25012686 - 25012866
Alignment:
| Q |
10 |
aaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaatcaaataaatttcaa |
109 |
Q |
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| T |
25012686 |
aaaaatccaatcgagcttaaagaaaagatgaaagtaggtaaatgcaagcatctgataattttgaacaataaatgattcatttaaatcaattaaatttcaa |
25012785 |
T |
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| Q |
110 |
cgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtataattcaagctcaatagtgttttattgt |
191 |
Q |
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| T |
25012786 |
tgaaatttatttgtctttttctctatgtgtgatccatttgcttccctttttgta-aaatcaagctcaatagtgttttcttgt |
25012866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 19514 - 19276
Alignment:
| Q |
4 |
gcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaatcaaataaa |
103 |
Q |
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||||||| |||| |||||||| |||| | | ||||||| |||| | ||||||| |||||| | |||||||| |||| ||| ||| ||||| | |||| |
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| T |
19514 |
gcttacataaattcaattgagcttaaaaaaacgttgaaactacagaagtgcaagtatttgacggtattgaacaataaatcattaatttaaatcgattaaa |
19415 |
T |
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| Q |
104 |
tttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcc--tttttagtataattcaagctcaatagtgttttattgttaacaattcg |
201 |
Q |
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| T |
19414 |
tttcaatgaaatatatttttctatttctctatgtttgatccattttcttccctttttgagtacaatccaagctcaataggcttttattttctataattcg |
19315 |
T |
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| Q |
202 |
atgtcaacaaatttttataccattcagcactagcctttg |
240 |
Q |
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|||||| |||||| ||||||||| |||||||||||||| |
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| T |
19314 |
atgtcataaaatttctataccatttagcactagcctttg |
19276 |
T |
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