View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_high_88 (Length: 242)
Name: NF3114_high_88
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_88 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 24056498 - 24056274
Alignment:
| Q |
18 |
actaagtgtgtctctagatgagttgaataatattagttaaactgaatatatgaatctcttaattttgttttaagctgaccaaagaaatcattttttatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24056498 |
actaagtgtgtctctagatgagttgaataatattagttaaactgaatatatgaatctcttaattttgttttaagctgaccaaagaaatcattttttatga |
24056399 |
T |
|
| Q |
118 |
ttctattatttatatcaatatgcttcaaaatgaagctaagagactcaagagtcacacctatgcttcaagatttggaagcaaaaagaaaagtcagaggaaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24056398 |
ttctattatttatatcaataagcttcaaaatgaagctaagagactcaagagtcacacccatgcttcaagatttggaagcaaaaagaaaagtcagaggaaa |
24056299 |
T |
|
| Q |
218 |
gagcaaccctgaatatagatgaatt |
242 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24056298 |
gagcaaccctgaatatagatgaatt |
24056274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University