View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_high_90 (Length: 240)
Name: NF3114_high_90
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_90 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 3033615 - 3033812
Alignment:
| Q |
19 |
tttgttgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttga |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033615 |
tttgttgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttga |
3033714 |
T |
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| Q |
119 |
tcaaggtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033715 |
tcaaggtccaagtctacaaaaatattattcaaacgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
3033812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 25125661 - 25125464
Alignment:
| Q |
19 |
tttgttgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttga |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
25125661 |
tttgttgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcataaaacttga |
25125562 |
T |
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| Q |
119 |
tcaaggtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||| |
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| T |
25125561 |
tcaaggtccaagtctacaaaaagattattcaaatgatagaaagactaatgaataagtgcttgaaaatttatggaaacaaacaatagctacaatactat |
25125464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 3041246 - 3041447
Alignment:
| Q |
19 |
tttgttgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttga |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
3041246 |
tttgttgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcatcaaacttga |
3041345 |
T |
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| Q |
119 |
tcaa----ggtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatact |
214 |
Q |
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|| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
3041346 |
tccaggttggtccaagtctacaaaaagattattcaaatgatagcaagactaatgaataagtgctggaaaatttatggaaacaaacaatagctacaatact |
3041445 |
T |
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| Q |
215 |
at |
216 |
Q |
| |
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|| |
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|
| T |
3041446 |
at |
3041447 |
T |
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