View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_high_94 (Length: 238)
Name: NF3114_high_94
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_high_94 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 33464383 - 33464217
Alignment:
| Q |
18 |
tttaaagttgcttaactcactaggttttctctcatcaaattctcatccgtttaataaacatgtgtgccaagtggaagaagaagcatatgaggaggttgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33464383 |
tttaaagttgcttaactcactaggttttctctcatcaaattctcatccgtttaataaccatgtgtgccaagtggaagaagaagcatatgaggaggttgaa |
33464284 |
T |
|
| Q |
118 |
gaggaagcaacgaaagatgagacatagatccaagtagtgtgtttgttctcctataacatcaagtgat |
184 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
33464283 |
gaggaagcaacgaaagatgagacatcgatccaagtagtgtgtttgttctccaacaacatcaagtgat |
33464217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 48569861 - 48569731
Alignment:
| Q |
43 |
tttctctcatcaaattctcatccgttt--aataaacatgtgtgccaagtggaagaagaag---catatgaggaggttgaagaggaagcaacgaaagatga |
137 |
Q |
| |
|
||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569861 |
tttctctcatcaaattctcatacgttttcaacaaccatgtgtgccaagtggaagaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatga |
48569762 |
T |
|
| Q |
138 |
gacatagatccaagtagtgtgtttgttctcc |
168 |
Q |
| |
|
|| | |||||||||||||||||||||||||| |
|
|
| T |
48569761 |
gatagagatccaagtagtgtgtttgttctcc |
48569731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 6006968 - 6007135
Alignment:
| Q |
17 |
ctttaaagttgcttaactcactaggttttctctcatcaaattctcatccgtttaataaacatgtgtgccaagtggaagaagaagcatatgaggaggttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6006968 |
ctttaaagttgcttaactcactaggttttctctcatcaaattctcatccgtttaataaccatgtgtgccaagtggaagaagaagcatatgaggatgttga |
6007067 |
T |
|
| Q |
117 |
agaggaagcaacgaaagatgagacatagatccaagtagtgtgtttgttctcctataacatcaagtgat |
184 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
6007068 |
agaggaagcaacgaaagatgagacatcgatccaagtagtgtgtttgttctccaacaacatcaagtgat |
6007135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 35757686 - 35757617
Alignment:
| Q |
87 |
agtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagacatagatccaagtagtg |
156 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
35757686 |
agtggaagaagaagcgtatgaggagattgaagaggaagcgccgaaagatgagacagagatctaagtagtg |
35757617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 30545179 - 30545031
Alignment:
| Q |
43 |
tttctctcatcaaattctcatccgttta--ataaacatgtgtgccaagtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30545179 |
tttctctcatcaaattctcatccgtttacaacaaccatgtgtgccaagtggaagaagaagcatatgaggaggttgaagaggaagcaacaaaagatgagac |
30545080 |
T |
|
| Q |
141 |
atagatccaagtagtgtgtttgttctcc-tataacatcaagtgatctta |
188 |
Q |
| |
|
| |||||||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
30545079 |
aaagatccaagtagtgtgtttgttatccgaacaacatcaagtgatctta |
30545031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 8145996 - 8145852
Alignment:
| Q |
43 |
tttctctcatcaaattctcatccgttt--aataaacatgtgtgccaagtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagac |
140 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8145996 |
tttctctcatcaaattctcatccgttttcaacaaccatgcgtgccaagtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagac |
8145897 |
T |
|
| Q |
141 |
atagatccaagtagtgtgtttgttctcc-tataacatcaagtgat |
184 |
Q |
| |
|
| ||||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
8145896 |
agagatccaagtagtctgtttgttctccgaacaacatcaagtgat |
8145852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 44154578 - 44154726
Alignment:
| Q |
43 |
tttctctcatcaaattctcatccgttt--aataaacatgtgtgccaagtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagac |
140 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154578 |
tttctctcatcaaattctcatccgttttcaacaaccatgcgtgccaagtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagac |
44154677 |
T |
|
| Q |
141 |
atagatccaagtagtgtgtttgttctcc-tataacatcaagtgatctta |
188 |
Q |
| |
|
| |||||||| ||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
44154678 |
aaagatccaattagtgtgtttgttatccaaacaacatcaagtgatctta |
44154726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 29058012 - 29057945
Alignment:
| Q |
87 |
agtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagacatagatccaagtag |
154 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
29058012 |
agtggaagaagaagcgcatgaggaggttgaagaggaagcgccgaaagatgagacagagatctaagtag |
29057945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 31872862 - 31872761
Alignment:
| Q |
87 |
agtggaagaagaagcatatgaggaggttgaagaggaagcaacgaaagatgagacatagatccaagtagtgtgtttgttctcctataacatcaagtgatct |
186 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
31872862 |
agtggaagaagaagcgtatgaggaggttgaagaggaagcgccgaaagatgagacagagatccaagtagtgtgtttgttcttcgacaacatcaagtgatct |
31872763 |
T |
|
| Q |
187 |
ta |
188 |
Q |
| |
|
|| |
|
|
| T |
31872762 |
ta |
31872761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 31873023 - 31872987
Alignment:
| Q |
33 |
ctcactaggttttctctcatcaaattctcatccgttt |
69 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31873023 |
ctcattaggttttctctcatcaaattctcatccgttt |
31872987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University