View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_10 (Length: 536)
Name: NF3114_low_10
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 35681418 - 35681927
Alignment:
| Q |
17 |
ataaggatccatactttgccttcattttcttaaggtgtgatatttttaatctctgcaatcctattcttcaacattatcaccttgctgctatcctattagt |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35681418 |
ataaggatccatactttgccttcattttcttaaggtgtgatgtttttaatctctgcaatcctattcttcaacattatcaccttgccgctatcctattagt |
35681517 |
T |
|
| Q |
117 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681518 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatattttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
35681617 |
T |
|
| Q |
217 |
aagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681618 |
aagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctct |
35681717 |
T |
|
| Q |
317 |
taaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35681718 |
taaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacag |
35681817 |
T |
|
| Q |
417 |
aattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35681818 |
aattatcaagtgagtctgctattgttggtaccttgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtct |
35681917 |
T |
|
| Q |
517 |
cttgttcatt |
526 |
Q |
| |
|
|||||||||| |
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|
| T |
35681918 |
cttgttcatt |
35681927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 117 - 412
Target Start/End: Original strand, 31635407 - 31635698
Alignment:
| Q |
117 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
31635407 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
31635506 |
T |
|
| Q |
217 |
aagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctct |
316 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31635507 |
aagaaacattataccaagggtactctcaccatttggtgtt---ctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctct |
31635603 |
T |
|
| Q |
317 |
taaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttat |
412 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
31635604 |
caaataaaaggggattcgtcta-tgtgttggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat |
31635698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 513
Target Start/End: Original strand, 31635882 - 31635991
Alignment:
| Q |
404 |
ctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatggg |
503 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||| ||||||||||||| |
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|
| T |
31635882 |
ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg |
31635981 |
T |
|
| Q |
504 |
atccaggtgg |
513 |
Q |
| |
|
|||| ||||| |
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|
| T |
31635982 |
atccgggtgg |
31635991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 498 - 526
Target Start/End: Original strand, 18945646 - 18945674
Alignment:
| Q |
498 |
aatgggatccaggtggtctcttgttcatt |
526 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
18945646 |
aatgggatccaggtggtctcttgttcatt |
18945674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 117 - 513
Target Start/End: Original strand, 4302720 - 4303113
Alignment:
| Q |
117 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
4302720 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
4302819 |
T |
|
| Q |
217 |
aagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctct |
316 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4302820 |
aagaaacattatactaagggtactctcaccatttggtgttctgc---atgttattaaacctttacttggatttcatgaaaaaggatattggttattctct |
4302916 |
T |
|
| Q |
317 |
taaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacag |
416 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| || |
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|
| T |
4302917 |
caaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatag |
4303016 |
T |
|
| Q |
417 |
aattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtgg |
513 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||| | ||| |||||||||||| |||| |||| ||||||||||||||||| ||||| |
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|
| T |
4303017 |
aattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgg |
4303113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 106 - 510
Target Start/End: Original strand, 37192603 - 37193008
Alignment:
| Q |
106 |
atcctattagttcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatat |
205 |
Q |
| |
|
||||||||| |||||||||||| ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37192603 |
atcctattatgtcagtttcttgaaaaacaaagcttctactcttgatcaatattatgcatatcttatgaatgcatttttaagctttattaaaggcttatat |
37192702 |
T |
|
| Q |
206 |
aaagtgggaccaagaaacgttagactaa----gggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaaggga |
301 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
37192703 |
gaagtgggaccaagaaacgttagactaactaagggtactctcaccatttgatgttctgc---atgttattaaacctttacttggacttcatgaaaaagga |
37192799 |
T |
|
| Q |
302 |
tattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagta |
401 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||| | | |
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|
| T |
37192800 |
tattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattcctatacttcaagtacaacatggtcaggcatcacttaacaatg |
37192899 |
T |
|
| Q |
402 |
ctctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatg |
501 |
Q |
| |
|
||||| ||| || |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
37192900 |
ctctagcttgtatagaattatcaagtgcgtctgcaattgttggtacattgctcagtggctgctttgtccataaaaagggaccctcacagttcactcaatg |
37192999 |
T |
|
| Q |
502 |
ggatccagg |
510 |
Q |
| |
|
||||||||| |
|
|
| T |
37193000 |
ggatccagg |
37193008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 37192144 - 37192233
Alignment:
| Q |
18 |
taaggatccatactttgccttcattttcttaaggtgtgatatttttaatctctgcaatcctattcttcaacattatcaccttgctgctat |
107 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37192144 |
taaggatccatcctatgccttcattttcttaaggtgtgatgtttttaatctctgcaatcctattcttcaacattatcaccttgctgctat |
37192233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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