View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_low_100 (Length: 238)
Name: NF3114_low_100
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_100 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 32073505 - 32073389
Alignment:
| Q |
106 |
aatacacttgccaaattattcatcacttatagcaactgaaaacattatcaaagagaagagaatagtaacatacactagaaaaagtggaatggggagggaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
32073505 |
aatacacttgccaaattattcatcacctatggtaactgaatacattatcaaagagaagagaatagtaacatacactagaaaaagcggaacggggagggaa |
32073406 |
T |
|
| Q |
206 |
acaccctctttgatgct |
222 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
32073405 |
acaccctatttgatgct |
32073389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 32073639 - 32073524
Alignment:
| Q |
4 |
ctcgaatttacacatcctagttaaaattgataattctaagtaaattttttacaattcttgtggagacaaacttttataaatattactacttgacgatact |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
32073639 |
ctcgaatttacacatcctagtcaaaattgaaatttctaagtaaaaaatttacaattcctgtggagataaacttttataaatattactacttgacgacact |
32073540 |
T |
|
| Q |
104 |
ttaatacacttgccaa |
119 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32073539 |
ttaatacacttgccaa |
32073524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 9154108 - 9154054
Alignment:
| Q |
61 |
ttgtggagacaaacttttataaatattactacttgacgatactttaatacacttg |
115 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||| |||| |||||||| |
|
|
| T |
9154108 |
ttgtggagacaaacttttatatacattactacttgacaatagtttagtacacttg |
9154054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 36341969 - 36342022
Alignment:
| Q |
77 |
ttataaatattactacttgacgatactttaatacacttgccaaattattcatca |
130 |
Q |
| |
|
|||||||||||| |||||||||| | |||| | ||||||| ||||||||||||| |
|
|
| T |
36341969 |
ttataaatattattacttgacgagagtttagttcacttgctaaattattcatca |
36342022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University