View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_102 (Length: 237)
Name: NF3114_low_102
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_102 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8957777 - 8957556
Alignment:
| Q |
1 |
ttgataaaaaaggctagctccgtccttgtcttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaaca |
100 |
Q |
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| T |
8957777 |
ttgataaaaaaggctagctccgtccttgtcttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaaca |
8957678 |
T |
|
| Q |
101 |
attggaacgttattggaagaaaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatcca |
200 |
Q |
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| T |
8957677 |
attggaacgttattggaagaaaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccttgaaattctctatcca |
8957578 |
T |
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| Q |
201 |
tagttccagcagccacagttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8957577 |
tagttccagcagccacagttat |
8957556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 8946459 - 8946518
Alignment:
| Q |
161 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagtt |
220 |
Q |
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| T |
8946459 |
ccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagtt |
8946518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 8946330 - 8946403
Alignment:
| Q |
32 |
tcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattgg |
105 |
Q |
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| T |
8946330 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattgg |
8946403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 34963088 - 34963285
Alignment:
| Q |
25 |
cttgtcttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttattggaagaaaat |
124 |
Q |
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||||||||||||||| | ||||||| ||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||| | | | ||| ||| |
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| T |
34963088 |
cttgtcttcacacactataatcttgcttttcacttttttcaattcataaacattgttacataaatccatgaaaacaattggaacatcttgtgtagacaat |
34963187 |
T |
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| Q |
125 |
gttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttat |
222 |
Q |
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| T |
34963188 |
gttcctacataaagagacaatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagttat |
34963285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 25928183 - 25928102
Alignment:
| Q |
33 |
cacacacaacaatcttgtttttcac-ttttttcaattccttaacattgtcacataaacccatgaaaacaattggaacgttat |
113 |
Q |
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| T |
25928183 |
cacacaccacaatcttggtttttacgttttttcaactccttaacattgtcgcataaacccataaaaacaataggaacattat |
25928102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 21687476 - 21687553
Alignment:
| Q |
30 |
cttcacacacaacaatcttgtttttcacttttttcaattccttaacattgtcacataaacccatgaaaacaattggaa |
107 |
Q |
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||||||| || |||||||| | |||||| | || ||||| |||||||||||||| | |||||| ||||||||||||| |
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| T |
21687476 |
cttcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaa |
21687553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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