View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_103 (Length: 237)
Name: NF3114_low_103
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_103 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 18318663 - 18318861
Alignment:
| Q |
17 |
caaaaatattacaactttgacctcactcgcatgttctggccttcaatgtctcaatagcacttatctcttcctcattgcagattgtttccctttccttgaa |
116 |
Q |
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| T |
18318663 |
caaaaatattacaactttgacctcactcacatgttctggccttcaatgtctcaatagcacttatctcttcctcattgcagattgtttccctttccttgaa |
18318762 |
T |
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| Q |
117 |
gaactcaacattccttccctcatatacttaatagataatgaaagcttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggtt |
215 |
Q |
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| T |
18318763 |
gaactcaacattccttcccccatattcttaatagataatgaaagcttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggtt |
18318861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 18314660 - 18314855
Alignment:
| Q |
19 |
aaaatattacaactttgacctcactcgcatgttctggccttcaatgtctcaatagcacttatctcttcctcattgcagattgtttccctttccttgaaga |
118 |
Q |
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| T |
18314660 |
aaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctgattgtttccctttgctcgaaga |
18314759 |
T |
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| Q |
119 |
actcaacattccttccctcatatacttaatagataatgaaagcttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggtt |
215 |
Q |
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| T |
18314760 |
actcgaccttagttaccccaaagagttaaaaaatcatgaaagcttactcaatggaatagaggttctttcatca-cacttttcaaactccgaaaggtt |
18314855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 8186382 - 8186484
Alignment:
| Q |
20 |
aaatattacaactttgacctcactcgcatgttctggccttcaatgtctcaatagcacttatctcttcctcattgcagattgtttccctttccttgaagaa |
119 |
Q |
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||||||||||||||||||||||||| ||||||| | || ||| | ||||||||||| | |||||||||| || |||||||| |||||||| |||||| |
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| T |
8186382 |
aaatattacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaa |
8186481 |
T |
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| Q |
120 |
ctc |
122 |
Q |
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||| |
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| T |
8186482 |
ctc |
8186484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 1755524 - 1755481
Alignment:
| Q |
82 |
tcttcctcattgcagattgtttccctttccttgaagaactcaac |
125 |
Q |
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| T |
1755524 |
tcttcctcattgctgactgtttccctttgcttgaagaactcaac |
1755481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 2363162 - 2363208
Alignment:
| Q |
79 |
atctcttcctcattgcagattgtttccctttccttgaagaactcaac |
125 |
Q |
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| T |
2363162 |
atctcttcttcattgctgattgtttccctttcctcgacgaactcaac |
2363208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 2367990 - 2368038
Alignment:
| Q |
79 |
atctcttcctcattgcagattgtttccctttccttgaagaactcaacat |
127 |
Q |
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| T |
2367990 |
atctcttcttcattgctgattgtttccctttactcgaagaactcgacat |
2368038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 2534034 - 2533990
Alignment:
| Q |
79 |
atctcttcctcattgcagattgtttccctttccttgaagaactca |
123 |
Q |
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| T |
2534034 |
atctcttcttgattgctgattgtttccctttacttgaagaactca |
2533990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 5106641 - 5106685
Alignment:
| Q |
79 |
atctcttcctcattgcagattgtttccctttccttgaagaactca |
123 |
Q |
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| T |
5106641 |
atctcttcttcattgctgattgtttccctttactcgaagaactca |
5106685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 6594018 - 6594058
Alignment:
| Q |
87 |
ctcattgcagattgtttccctttccttgaagaactcaacat |
127 |
Q |
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| T |
6594018 |
ctcattgcagagtgtttccctttgcttgaaaaactcaacat |
6594058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 29021784 - 29021728
Alignment:
| Q |
66 |
ctcaatagcacttatctcttcctcattgcagattgtttccctttccttgaagaactc |
122 |
Q |
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| T |
29021784 |
ctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaagaactc |
29021728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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