View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_106 (Length: 236)
Name: NF3114_low_106
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_106 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35629474 - 35629245
Alignment:
| Q |
1 |
ccgttatgtttgctggcttttgatctagttat--gctttggtggattttgcagggaattgcaaaaaggcttgtgagtactgttctagtggaagcggctgc |
98 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
35629474 |
ccgttatgtttgctggcttttgatttagttatatgctttggtggattttgcagggaattgcaaaaaggcttgtgagtactgttctagcgaaagcggctgc |
35629375 |
T |
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| Q |
99 |
taatgggaatgttacctgtaataacatgatgcatgctaatctgggacgtggcaatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtg |
198 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35629374 |
taatgggaatgttacctgtaatagcatgatgcatgctaatctgggacgtggcgatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtg |
35629275 |
T |
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| Q |
199 |
ttctttgacaaaacgtcttttctgatgatg |
228 |
Q |
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| T |
35629274 |
ttctttgacaaaacgtcgtttctgaggatg |
35629245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 35635890 - 35635665
Alignment:
| Q |
3 |
gttatgtttgctggcttttgatctagttatgctttggtggattttgcagggaattgcaaaaaggcttgtgagtactgttctagtggaagcggctgctaat |
102 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35635890 |
gttatgtttgctggcttttgatttagttatgctatggtgattttttcagggaattgcaaaaaggcttgtgagtactgttctagcacaagcggctgctaat |
35635791 |
T |
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| Q |
103 |
gggaatgttacctgtaataacatgatgcatgctaatctgggacgtggcaatgggaacaggaggtcttttcatgatgatataagtgtgattgttgtgttct |
202 |
Q |
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| T |
35635790 |
aggaattctacctataataccatgaagaatgctaatctgggacgtggcgatgggaacaggaggtattttcatgatgatataagtgtgattgttgtgttct |
35635691 |
T |
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| Q |
203 |
ttgacaaaacgtcttttctgatgatg |
228 |
Q |
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| T |
35635690 |
tggacaaaaagtcgattctgaggatg |
35635665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 35634328 - 35634276
Alignment:
| Q |
159 |
caggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaa |
211 |
Q |
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| T |
35634328 |
caggaggtcttttcgtgatgatataagtgtgattgttgtgttctttgacaaaa |
35634276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 35632479 - 35632435
Alignment:
| Q |
159 |
caggaggtcttttcatgatgatataagtgtgattgttgtgttctt |
203 |
Q |
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| T |
35632479 |
caggaggtcttttcatgatgatataagtgtcattgttttgttctt |
35632435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 10299540 - 10299599
Alignment:
| Q |
161 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttc |
220 |
Q |
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| T |
10299540 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttc |
10299599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 10319972 - 10320031
Alignment:
| Q |
161 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttc |
220 |
Q |
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| T |
10319972 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttc |
10320031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 10337088 - 10337147
Alignment:
| Q |
161 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcttttc |
220 |
Q |
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| T |
10337088 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttc |
10337147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 10299382 - 10299456
Alignment:
| Q |
3 |
gttatgtttgctggcttttgatctagttatgctttggtggattttgcagggaattgcaaaaaggcttgtgagtac |
77 |
Q |
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| T |
10299382 |
gttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcaaaaaggcttctgagtac |
10299456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 10319814 - 10319888
Alignment:
| Q |
3 |
gttatgtttgctggcttttgatctagttatgctttggtggattttgcagggaattgcaaaaaggcttgtgagtac |
77 |
Q |
| |
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| T |
10319814 |
gttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcgaaaaggcttctgagtac |
10319888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 10336930 - 10337004
Alignment:
| Q |
3 |
gttatgtttgctggcttttgatctagttatgctttggtggattttgcagggaattgcaaaaaggcttgtgagtac |
77 |
Q |
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| T |
10336930 |
gttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcgaaaaggcttctgagtac |
10337004 |
T |
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