View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_low_108 (Length: 235)
Name: NF3114_low_108
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_108 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 13440325 - 13440236
Alignment:
| Q |
1 |
cgaactttgttctccaaatgtgttttataacttttccaaagagtgttaagtaaaactattgagtttttccgatctattcaaacagttaact |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13440325 |
cgaactttgttctccaaatgtgttttataacttttccaaagagtgttaagt-aaactattgagtttttccgatctattcaaacagttaact |
13440236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 13439667 - 13439602
Alignment:
| Q |
156 |
ttacaagtgtggtatttatcgacaaaactagtatattaaataaaaagaatacatatatggtcaaat |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13439667 |
ttacaagtgtgttatttatcgacaaaactagtatattaaataaaaagaatacatatatggtcaaat |
13439602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University