View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_11 (Length: 520)
Name: NF3114_low_11
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_11 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 237 - 509
Target Start/End: Original strand, 50421207 - 50421476
Alignment:
| Q |
237 |
gcatgaatattcctcctatattctttttgagttaacaatttgagaaaaagagtgactagaacttgagtcatcaagctcgatacctaaaatctcttcctta |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50421207 |
gcatgaatattcctcctatattctttttgagttaacaatttgagaaaaagagtgactagaacttgagtcatcaagctcgatacctaaaatctcttcctta |
50421306 |
T |
|
| Q |
337 |
atgtccaatgtggcagcattatgtgagacataagcatcatatactttacctcctgctgcaggttttccttcatcctgcaactgaagtgcaaactcaagtt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50421307 |
atgtccaatgtggcagcattatgtgagacataagcatcatatactttacctcctgctgcaggttttccttcatcctgcaactgaagtgcaaactcaagtt |
50421406 |
T |
|
| Q |
437 |
tctattaacacatcaccccccattgaaggacaaacaaagccattatcatctaaacccttcttaccctgtctct |
509 |
Q |
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|| ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50421407 |
tccattaacaaatca---cccattgaaggacaaacaaagccattatcacctaaacccttcttaccctgtctct |
50421476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 50420987 - 50421141
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50420987 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggc |
50421086 |
T |
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| Q |
117 |
caactaattgggttataatatatttccttaaaaattacaatgcattgtaagaagc |
171 |
Q |
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| T |
50421087 |
caactaattgggttataatatatttccttaaaaattacaatgcattgtaagaagc |
50421141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 18146008 - 18145914
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttac |
111 |
Q |
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||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| || ||| || ||| ||||||||||||| |
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| T |
18146008 |
agtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatggaatgtctaatgtatttttac |
18145914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 25631462 - 25631347
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggc |
116 |
Q |
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|
||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| || |||||| || ||| || ||| ||||||||||||| ||| |
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| T |
25631462 |
agtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtattggtttcagaagatggaatgtctaatgtatttttacctggt |
25631363 |
T |
|
| Q |
117 |
caactaattgggttat |
132 |
Q |
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|| ||||||| |||| |
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| T |
25631362 |
gaattaattggattat |
25631347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 48191223 - 48191108
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggc |
116 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||| || ||| || ||| || || ||||||||||||| ||| |
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| T |
48191223 |
agtacacatccataatagacatatcgaaattattgtgcgtcaaatgacatccaaagtcttggtctcagaagatggaatgtttaatgtatttttacctggt |
48191124 |
T |
|
| Q |
117 |
caactaattgggttat |
132 |
Q |
| |
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|| ||||||| |||| |
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| T |
48191123 |
gaattaattggattat |
48191108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 229239 - 229330
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttt |
108 |
Q |
| |
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||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| || ||| || ||| ||||| |||| |
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| T |
229239 |
agtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatggaatgtctaatgtttttt |
229330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 43173942 - 43174057
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggc |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || | || ||| || ||| ||||||||||||| ||| |
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| T |
43173942 |
agtacacatccataatagacataacaaaattattgtgcgtcaaataacatccaaagtcttggctttagaagatggaatgtctaatgtatttttacctggt |
43174041 |
T |
|
| Q |
117 |
caactaattgggttat |
132 |
Q |
| |
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|| ||||||| |||| |
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| T |
43174042 |
gaattaattggattat |
43174057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 45212509 - 45212568
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctt |
76 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45212509 |
agtacacatccataatagacatatcaaaattattgtgcgtcaaataacatccaaagtctt |
45212568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 3982 - 4073
Alignment:
| Q |
17 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttt |
108 |
Q |
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||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||| || ||| || ||| |||||||||| |
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| T |
3982 |
agtacacatccataatagacaaatcgaaattattgtgcgtcaaataacatccaaagtcttgatttcagaagatggaatgtctaatgtatttt |
4073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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