View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_110 (Length: 228)
Name: NF3114_low_110
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_110 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45270174 - 45270395
Alignment:
| Q |
1 |
ctctgcaaagtaacacgtgttttcataatgtttttctggcttgtttggttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtg |
100 |
Q |
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| T |
45270174 |
ctctgcaaagtaacacgtgttttcatgatgtttttctggcttgttttgttcttctggccaagtggtccatccatcttgatgaataaaatcaccaattgtg |
45270273 |
T |
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| Q |
101 |
gattccatgatgactgtctttgattcattcttccatggtctgcccaagtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatat |
200 |
Q |
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| T |
45270274 |
gattccatgatgactgcctttgattcattttgccatggtctgcccaagtaagacctaactgtgaatttttcagggaccaatgctgcttctgggatgatat |
45270373 |
T |
|
| Q |
201 |
tgcagtcctggataacaatacc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45270374 |
tgcagtcctggataacaatacc |
45270395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 45273753 - 45273927
Alignment:
| Q |
48 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgtctttgattcattcttccatggtctgcccaa |
147 |
Q |
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| T |
45273753 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaa |
45273852 |
T |
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| Q |
148 |
gtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaatacc |
222 |
Q |
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| T |
45273853 |
gtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacc |
45273927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 45281997 - 45282171
Alignment:
| Q |
48 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgtctttgattcattcttccatggtctgcccaa |
147 |
Q |
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||||| || ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||| | || |||||||||||||||||| |
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| T |
45281997 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaa |
45282096 |
T |
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| Q |
148 |
gtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaatacc |
222 |
Q |
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| T |
45282097 |
gtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacc |
45282171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 45293337 - 45293511
Alignment:
| Q |
48 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgtctttgattcattcttccatggtctgcccaa |
147 |
Q |
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||||| || |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||| | | |||||||||||||||||| |
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| T |
45293337 |
gttctccttgccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgctaaaaccttccatggtctgcccaa |
45293436 |
T |
|
| Q |
148 |
gtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaatacc |
222 |
Q |
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| T |
45293437 |
gtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaatacc |
45293511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 45302297 - 45302471
Alignment:
| Q |
48 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgtctttgattcattcttccatggtctgcccaa |
147 |
Q |
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||||| || |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||| | | |||||||||||||||||| |
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| T |
45302297 |
gttctccttgccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgctaaaaccttccatggtctgcccaa |
45302396 |
T |
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| Q |
148 |
gtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaatacc |
222 |
Q |
| |
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|||||| ||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||| |
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| T |
45302397 |
gtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaatacc |
45302471 |
T |
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