View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_118 (Length: 212)

Name: NF3114_low_118
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_118
NF3114_low_118
[»] chr8 (3 HSPs)
chr8 (100-189)||(36167724-36167813)
chr8 (98-189)||(41481726-41481817)
chr8 (105-183)||(18951129-18951207)
[»] chr7 (8 HSPs)
chr7 (100-189)||(4842648-4842737)
chr7 (100-183)||(4835575-4835658)
chr7 (100-183)||(25857131-25857214)
chr7 (37-100)||(10974926-10974989)
chr7 (100-185)||(24379279-24379364)
chr7 (99-150)||(24380113-24380164)
chr7 (100-183)||(27340935-27341019)
chr7 (99-189)||(38994059-38994149)
[»] chr3 (8 HSPs)
chr3 (100-189)||(44782524-44782613)
chr3 (100-189)||(54967210-54967299)
chr3 (112-189)||(54979854-54979931)
chr3 (100-183)||(18556305-18556388)
chr3 (99-183)||(39298916-39299002)
chr3 (99-154)||(17645926-17645982)
chr3 (99-152)||(50603351-50603404)
chr3 (100-144)||(31725198-31725242)
[»] scaffold0479 (1 HSPs)
scaffold0479 (100-189)||(2847-2936)
[»] chr4 (4 HSPs)
chr4 (100-189)||(9757212-9757301)
chr4 (129-196)||(37286912-37286979)
chr4 (117-183)||(42682854-42682920)
chr4 (100-144)||(25002905-25002947)
[»] scaffold0003 (1 HSPs)
scaffold0003 (100-190)||(342217-342307)
[»] chr6 (3 HSPs)
chr6 (99-183)||(22981627-22981711)
chr6 (99-183)||(23806697-23806781)
chr6 (99-152)||(31151925-31151978)
[»] chr5 (5 HSPs)
chr5 (100-168)||(33808143-33808213)
chr5 (100-168)||(33811797-33811867)
chr5 (100-168)||(33816715-33816785)
chr5 (99-161)||(16698609-16698671)
chr5 (98-181)||(22763812-22763895)
[»] chr2 (1 HSPs)
chr2 (114-168)||(37038058-37038112)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 36167813 - 36167724
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataaacgtaatgacacaaaga 36167724  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 41481817 - 41481726
Alignment:
Q  98 cttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  41481817 cttgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaaga 41481726  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 18951129 - 18951207
Alignment:
Q  105 ggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgaca 18951207  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 4842648 - 4842737
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagtgtaatgacacaaaga 4842737  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 4835575 - 4835658
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcactagtggaaacgtgaaatataaacgtaatgaca 4835658  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 25857131 - 25857214
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcactagcggaaacgtgaaatataagcgtaatgaca 25857214  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 10974989 - 10974926
Alignment:
Q  37 aggcagatacagacaattatacttgtttcgcatacaatcaggagtagtcaagtcccttgcactt 100  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10974989 aggcagacacaaacaattatacttgtttcgcatataatcaggagtagtcaagtcccttgcactt 10974926  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 24379279 - 24379364
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacata 185  Q
    |||||| ||||| || ||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||    
T  24379279 tgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcactagtggaaacgtaaaatataaacgtaatgacata 24379364  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 24380164 - 24380113
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggca 150  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24380164 ttgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 27340935 - 27341019
Alignment:
Q  100 tgttgggaaatg-cctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    |||||||||||  ||| ||||||||||||  |  ||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  27340935 tgttgggaaataacctccataatttccctcttttgtgaactcaaaataggcactagcggaaacatgaaatataagcgtaatgaca 27341019  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 38994059 - 38994149
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||| | |||||||||||  |  ||| |||||| ||||||| |||   ||||||| ||||||||||||||||||||| |||||    
T  38994059 ttgttgggaaatacatgcataatttctatcatccatgaacttaaaatagacaccgacggaaacatgaaatataaatgtaatgacacaaaga 38994149  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 44782524 - 44782613
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacactagcggaaacgtgaaatataaacgtaatgacacaaaga 44782613  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 54967210 - 54967299
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||  ||||||||| |||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcactagcggaaacgtgaaataaaagcgtaatgacacaaaga 54967299  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 54979854 - 54979931
Alignment:
Q  112 cctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| || |||||||||| |||||    
T  54979854 cctgcataatttccctcctccgtcaactcaaaataagcactagcggaaacgtgaaataaaagtgtaatgacacaaaga 54979931  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 18556305 - 18556388
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    ||||||||||  ||| |||||||| ||| |||| ||||||||||||||| || ||| ||||||||||||||||  |||||||||    
T  18556305 tgttgggaaacacctacataatttgcctcctccatgaactcaaaataggtaccagcagaaacgtgaaatataagcgtaatgaca 18556388  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 39299002 - 39298916
Alignment:
Q  99 ttgttgggaaatgcctgc-ataatttcccttctccgtgaactcaaaatag-gcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    ||||||||||||| || | ||||||||||| || | |||||| ||||||| ||| |||| |||||||||||||||| ||||||||||    
T  39299002 ttgttgggaaatgacttccataatttccctccttcatgaacttaaaatagcgcattagcagaaacgtgaaatataagtgtaatgaca 39298916  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 17645982 - 17645926
Alignment:
Q  99 ttgttgggaaatg-cctgcataatttcccttctccgtgaactcaaaataggcactag 154  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||    
T  17645982 ttgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacactag 17645926  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 50603404 - 50603351
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcact 152  Q
    ||||||||||||||| | | |||||| || ||||||||||||||||||| ||||    
T  50603404 ttgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacact 50603351  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 31725198 - 31725242
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaa 144  Q
    |||||||||||| ||||||||||  ||||||||||||| ||||||    
T  31725198 tgttgggaaatgtctgcataattcaccttctccgtgaattcaaaa 31725242  T

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Target: scaffold0479 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 2936 - 2847
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacactagcggaaacgtgaaatataagcgtaatgacacaaaga 2847  T

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Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 9757212 - 9757301
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaaga 189  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcactagcggaaacgtgaaatataagcgtaatgacacaaaga 9757301  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 37286912 - 37286979
Alignment:
Q  129 ctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaaagtttt 196  Q
    |||||||| |||||||||  ||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37286912 ctccgtgagctcaaaataaacactagcggaaacgtgaaatataaacgtaatgacagaaagaaaatttt 37286979  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 42682854 - 42682920
Alignment:
Q  117 ataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    ||||||||| | | ||||||||||||||||| |||||||| |||||| ||||||||| |||||||||    
T  42682854 ataatttccttcccccgtgaactcaaaatagacactagcgaaaacgtaaaatataaacgtaatgaca 42682920  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 25002905 - 25002947
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaa 144  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||    
T  25002905 tgttgggaaatgc-tgcataatttccct-ctccgtgaactcaaaa 25002947  T

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Target: scaffold0003 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 342217 - 342307
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgacataaagaa 190  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcactagcagaaacgtgaaatataagcgtaatgacacaaagaa 342307  T

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Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 22981711 - 22981627
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||  |||||||||    
T  22981711 ttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgaca 22981627  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 23806697 - 23806781
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatgaca 183  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||  |||||||||    
T  23806697 ttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcactagcggaaacgtgaaaaataagcgtaatgaca 23806781  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 31151925 - 31151978
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcact 152  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  31151925 ttgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcact 31151978  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 33808213 - 33808143
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaat 168  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| ||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 33808143  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 33811867 - 33811797
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaat 168  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| ||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 33811797  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 33816785 - 33816715
Alignment:
Q  100 tgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcac--tagcggaaacgtgaaat 168  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| ||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 33816715  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 16698671 - 16698609
Alignment:
Q  99 ttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaac 161  Q
    ||||||||||||   |||||||||||| | ||||||||||||| |||||||||||||||||||    
T  16698671 ttgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcactagcggaaac 16698609  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 22763812 - 22763895
Alignment:
Q  98 cttgttgggaaatgcctgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaatataaatgtaatga 181  Q
    |||||||||||||| | ||||||||| | | ||| | ||| | ||||||||||||||| ||||||||||||||||  |||||||    
T  22763812 cttgttgggaaatgtcagcataattttcttcctcggagaatttaaaataggcactagcagaaacgtgaaatataagcgtaatga 22763895  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 37038112 - 37038058
Alignment:
Q  114 tgcataatttcccttctccgtgaactcaaaataggcactagcggaaacgtgaaat 168  Q
    ||||||||||| || |||||||||||||||||||||||||||| |||| ||||||    
T  37038112 tgcataatttctctcctccgtgaactcaaaataggcactagcgaaaacctgaaat 37038058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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