View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_13 (Length: 503)
Name: NF3114_low_13
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 485
Target Start/End: Complemental strand, 22158346 - 22157874
Alignment:
| Q |
13 |
cagatcatccaggtaagagctacattttgacacccaaaatatgtgtcacctgtaataaccagttaatgttttacattttacgtgtatgtacagtgtacaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22158346 |
cagatcatccaggtaagagctacattttgacacccaaaatatgtgtcacctgtaataaccagttaatgttttacattttacgtgtatatacagtgtacaa |
22158247 |
T |
|
| Q |
113 |
taaatttataggtagtgtggttacagtttaacataacagtacaagatatatctcaaacccttgcaaggattctagttctagactttaaaagcatcagcct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158246 |
taaatttataggtagtgtggttacagtttaacataacagtacaaaatatatctcaaacccttgcaaggattctagttctagactttaaaagcatcagcct |
22158147 |
T |
|
| Q |
213 |
aagtggaatttcccaaaagctagacgatatcagattttccttcgttaaactagaccaccagaattcatttagttactgatccatctcctttttctgggag |
312 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158146 |
aagtgtaatttcccaaaagctagacgatatcagattttccttcattaaactagaccaccagaattcatttagttactgatccatctcctttttctgggag |
22158047 |
T |
|
| Q |
313 |
gtcgctcttgtttgacctctgactccactggattttcagttttggcagaaggcaaaggttcagtctctagcttcttgataaccagggtttctttttcact |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158046 |
gtcgctcttgtttgacctctgactccactggattttcagttttggcagaaggcaaaggttcagtctctagcttcttgataaccagggtttctttttcact |
22157947 |
T |
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| Q |
413 |
tggcattgggagcttgaaccgctcactccgtttcttcagcctctcaactgtgtccaggtgccgatcccctgat |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22157946 |
tggcattgggagcttgaaccgctcactccgtttcttcagcctctcaactgtgtccaggtgccgatcccctgat |
22157874 |
T |
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