View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_15 (Length: 497)
Name: NF3114_low_15
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 91 - 300
Target Start/End: Complemental strand, 9004305 - 9004096
Alignment:
| Q |
91 |
tctggcgtgtgttgatagtgatgaagttgatgatgatgatttaagggtgggaagttgaagatcttgatcattagtgcaatatcccattgtggggtcatta |
190 |
Q |
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| T |
9004305 |
tctggcgtgtgttgatagtgatgaagttgatgatgatgatttaagtgtgggaagttgaagatcttgatcattagtgcaatatcccattgtggggtcagta |
9004206 |
T |
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| Q |
191 |
aagcaagccaattgcctagatgcctcagtttgtccattcaattgagaagcaacaagcctatccaaagctacccaattagtaagaccaccatcaccacatg |
290 |
Q |
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| T |
9004205 |
aagcaagccaattgcctagaagcctcagtttgtccattcaattgagaagcaacaagcctatccaaagctacccaattagtaagaccaccatcaccacatg |
9004106 |
T |
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| Q |
291 |
ctatcaccat |
300 |
Q |
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| T |
9004105 |
ctatcaccat |
9004096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 357 - 481
Target Start/End: Complemental strand, 9004030 - 9003906
Alignment:
| Q |
357 |
cagagaatgatccttcattttcattagccatatctacttgaataattgcatgatacccatcattgttgttctcattgttctccatgcttgttgattttgg |
456 |
Q |
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| T |
9004030 |
cagagaatgacccttcattttcattagccatatctacttgaataattgcatgatacccatcattgttgttctcattgttctccatgcttgttgattttgg |
9003931 |
T |
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| Q |
457 |
actttctaaatttggaagtttcatg |
481 |
Q |
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| T |
9003930 |
actttctaaatttggaagtttcatg |
9003906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 9004385 - 9004339
Alignment:
| Q |
11 |
cacagatcaatctcacttgcatagtcatgtgaaggactaatgtaagc |
57 |
Q |
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| T |
9004385 |
cacagatcaatctcacttgcatagtcatgtgagggactaatgtaagc |
9004339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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