View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_18 (Length: 477)
Name: NF3114_low_18
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 5894325 - 5893862
Alignment:
| Q |
1 |
ataatattttttcaacttctacaacattattcataaggttcttatcaatttgaatctttagcaaacacacaattattaagagaaaagcttattgattatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894325 |
ataatattttttcaacttctacaacattattcataaggttcttatcaatttgaatctttagcaaacacacaattattaagagaaaagcttattgattatt |
5894226 |
T |
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| Q |
101 |
ggacgagctttgcattgtgcctccaatggaatggccataggcaacagagttccacgtccttcagtcatatcaactccttccttgccaatacttttccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5894225 |
ggacgagctttgcattgtgcctccaatggaatggccataggcaacagagttccacgtccttcagtcatatcaactccttccttgccaatccttttccatt |
5894126 |
T |
|
| Q |
201 |
caaagcattgaatcaaagatcccaaagtcaagctcaaagttctcagggctaagcccgacccaggacaagccctcctccccatcccaaaaggaataaaccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894125 |
caaagcattgaatcaaagatcccaaagtcaagctcaaagttctcagggctaagcccgacccaggacaagccctcctccccatcccaaaaggaataaaccc |
5894026 |
T |
|
| Q |
301 |
atgtttgtctccttgatgaccatcctcaaacctctcgggcttaaagctcatagggtcagcccacaaattagggtctctatgaatagcccaagcattcacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894025 |
atgtttgtctccttgatgaccatcctcaaacctctcgggcttaaagctcatagggtcagcccacaaattagggtctctatgaatagcccaagcattcacc |
5893926 |
T |
|
| Q |
401 |
atcaacatggtgttttgaggcacatcatagcctcccacagtgcaagctttagatgataaatgtg |
464 |
Q |
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| T |
5893925 |
atcaacatggtgttttgaggcacatcatagcctcctacagtgcaagctttagttgataaatgtg |
5893862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 5886278 - 5886186
Alignment:
| Q |
325 |
ctcaaacctctcgggcttaaagctcatagggtcagcccacaaattagggtctctatgaatagcccaagcattcaccatcaacatggtgttttg |
417 |
Q |
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|||||||||||| |||||||| | |||| ||| ||||||||| || ||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
5886278 |
ctcaaacctctctggcttaaaacaagtaggatcactccacaaatttggatctctatgaatgacccaagcattcaccatcaaaattgtgttttg |
5886186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 9400327 - 9400359
Alignment:
| Q |
367 |
attagggtctctatgaatagcccaagcattcac |
399 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
9400327 |
attagagtctctatgaatagcccaagcattcac |
9400359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 20074089 - 20074121
Alignment:
| Q |
367 |
attagggtctctatgaatagcccaagcattcac |
399 |
Q |
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|||||||||| |||||||||||||||||||||| |
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|
| T |
20074089 |
attagggtctgtatgaatagcccaagcattcac |
20074121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 9000218 - 9000250
Alignment:
| Q |
367 |
attagggtctctatgaatagcccaagcattcac |
399 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
9000218 |
attagggtctctctgaatagcccaagcattcac |
9000250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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