View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_19 (Length: 471)
Name: NF3114_low_19
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 5019844 - 5020293
Alignment:
| Q |
18 |
agtcagtactgtgggttgtaactatgtttacgtttgaggcagacactactagggtatgcttctcttttttggttctttaattaggatttaggaagcataa |
117 |
Q |
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| T |
5019844 |
agtcagtactgtgggttgtaactatctttacgtttgaggcagacactactagggtatgcttctcttttttggttctttaattaggatttaggaagcataa |
5019943 |
T |
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| Q |
118 |
agcctaaattatgcatctattgtgcacaa-cagtacgaggtgatgaacacatcagcaatactgatctagaaaattgatctgtgaaaagttgcaatgaatt |
216 |
Q |
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| T |
5019944 |
agcctaaattatgcatctattgtgcacaaacagtatgaggtgatgaacacatcagcaatactgatctagaaaattgatctgtgaaaagttgcaatgaatt |
5020043 |
T |
|
| Q |
217 |
tatcaaataaacttgtttttgaaatatcattttctcttcaacttatttttcaaaatgtataaaagggatatataatatgtaaattatataaaatttgtta |
316 |
Q |
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| T |
5020044 |
tatcaaataaacttgcttttgaaatatcattttctcttcaacttatttttcaaaatgtataaaagggatttataatatgtaaagtatataaaatttgtta |
5020143 |
T |
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| Q |
317 |
ttttagtctttttgttgttaagatactaaggatatgtttgctacacatgatagagatatcatatcttgatttaatccggtgttttgtagaccaatnnnnn |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||| |
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| T |
5020144 |
ttttagtctttttgttgttaagatactaaggatctgtttggtacacatgatagagatatcatatcctaatttaatccggtgttttgtggaccaataaaaa |
5020243 |
T |
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| Q |
417 |
nngatacattaaactcatttttaatcctatcttactcaccctttgctact |
466 |
Q |
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| T |
5020244 |
aggatacattaaactcatttttaatcctatcttactcaccctttgttact |
5020293 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 129178 - 129142
Alignment:
| Q |
425 |
ttaaactcatttttaatcctatcttactcaccctttg |
461 |
Q |
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||||||||||||||||||||||| || |||||||||| |
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| T |
129178 |
ttaaactcatttttaatcctatcatattcaccctttg |
129142 |
T |
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