View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_20 (Length: 466)
Name: NF3114_low_20
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 50530468 - 50530907
Alignment:
| Q |
1 |
tgtttttctgtgtgtgatgatgtgcgttatggatgggtttgaaagacagcttttataacccnnnnnnnnnnnnnngcaacaaagtgcaaaaagattgctg |
100 |
Q |
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| T |
50530468 |
tgtttttctgtgtgtgatgatgtgcgttatggatgggtttgaaagacagcttttataacc--------tctctctgcaacaaagtgcaaaaagattgctg |
50530559 |
T |
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| Q |
101 |
tgaacagtttcactgttttagttcactgaactagtaaccagtaaagtatcaaatcatagctaaggataatgctatttattattttaccatactcttacgt |
200 |
Q |
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| T |
50530560 |
tgaacagtttcactgttttagttcactgaactactaaccagtaaagtatcaaatcatagcgaaggataatgctatttattattttaccaaactgttacgt |
50530659 |
T |
|
| Q |
201 |
ttataaatattcattcccctggtcnnnnnnntaatataaatattcctaccataattcattcattttatttattttttaattatgaagtttctaccttact |
300 |
Q |
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| T |
50530660 |
ttataaatattcattcccctggtcaaaaaaataatataaatattcctaccataattcattcattttatttattttttaattatgaagtttctaccttact |
50530759 |
T |
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| Q |
301 |
ttatacacgactaatctacttgtatgtttggttgtacgttgaatcgtaaattctaacatttcgatatcattttaatgttaaaaatatagaagtcataaat |
400 |
Q |
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||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50530760 |
ttatacatgactaatctactagtatgtttggttgtaagttgaatcgtaaattctaacatttcgatgtcattttaatgttaaaaatatagaagtcataaac |
50530859 |
T |
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| Q |
401 |
tatgacatcagattaaaaatacatttaatggactctcaccgctaaagc |
448 |
Q |
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|||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
50530860 |
tatgacatcagactaaatataagtttagtggactctcaccgctaaagc |
50530907 |
T |
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