View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_23 (Length: 452)
Name: NF3114_low_23
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 28 - 442
Target Start/End: Complemental strand, 34262277 - 34261863
Alignment:
| Q |
28 |
tcatctgaactcaaatgattaatgaatttcgtaaagacaaatcatttnnnnnnnnccctgagcttaatttcgagtaaataaactttatataccattcaac |
127 |
Q |
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| T |
34262277 |
tcatctgaattcaaatggttaatgagtttcgtaaagacaaatcatttaaaaaaaaccctgagcttaatttcgagtaaataaactttatttaccattcaac |
34262178 |
T |
|
| Q |
128 |
tgaatttcatattacacatagagaccagccaagacaagacaaacgcttctccctcactcacccccacaaaccaaaccaaacctgtcacatagagactctt |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34262177 |
tgaatctcatattacacatagagaccagccaagacaagacaaacgcttctccctcactcacccccaccaaccaaaccaaacctgtcacatagagactctt |
34262078 |
T |
|
| Q |
228 |
cctcacgccacaacactaatcatcaaatcaaactcaaagttatgtaattatgttatgttcccttaactcattttggctccattcacaagccatggcgtgt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262077 |
cctcacgccacaacactaatcatcaaatcaaactcaaagttatgtaattatgttatgttcccttaactcattttggctccattcacaagccatggcgtgt |
34261978 |
T |
|
| Q |
328 |
ctaacaccccattgcatttattgttacatttactattttgccacttaaacaataacactcctcttcagttcttacccgttagttccttgctagtttcaca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34261977 |
ctaacaccccattgcatttattgttacatttactattttgccacttaaacaataacactcctcttcagttcttacccgttagttccttgctagtttcaca |
34261878 |
T |
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| Q |
428 |
cgcttgttcattcat |
442 |
Q |
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||||||||||||||| |
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| T |
34261877 |
cgcttgttcattcat |
34261863 |
T |
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