View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_24 (Length: 451)
Name: NF3114_low_24
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 221 - 437
Target Start/End: Complemental strand, 15302462 - 15302242
Alignment:
| Q |
221 |
gaaacaagcacagtcctaaat----atatatgacaaatatacaaaggattcactattgtgtttgatactatcgatactccatcgaaaaacttattagacg |
316 |
Q |
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| T |
15302462 |
gaaacaagcacagtcctaaatgaatatatatgacaaatatacaaaggattcactattgtgtttgatactatcgatactccatcgaaaaacttattagacg |
15302363 |
T |
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| Q |
317 |
cataagaagtattcttctttcaattgaattttctgctactacttatttaaggtgtcttaaggccaactgcatgttagtctgtttttggggcttcaatttt |
416 |
Q |
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| T |
15302362 |
cataagaagtattcttctttcaattgaattttctgctactacttatttaaggtgtcttaaggccaactgcatgttagtctgtttttggggcttcaatttt |
15302263 |
T |
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| Q |
417 |
tctatgaaatagaaaccaatc |
437 |
Q |
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| T |
15302262 |
tctatgaaatagaaaccaatc |
15302242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 15302979 - 15302838
Alignment:
| Q |
4 |
gatgaaggacgatatgttttggccaagactattctttgattgcctctcaaaaacaaac-cgtggattgtgtaggactctgattaaagaatagtaaaactg |
102 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
15302979 |
gatgaagggcgatatgttttggccaaaactattctttgattgcctctcaaaaaaaaaaacgctgattgtgtaggactctgattaaagaatagtaaaactg |
15302880 |
T |
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| Q |
103 |
acacataagaaaatatatgctttaaaatacataggaaaatgc |
144 |
Q |
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| T |
15302879 |
acacataagaaaatatgtgctttaaaatacataggaaaatgc |
15302838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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