View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_28 (Length: 417)
Name: NF3114_low_28
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 36673635 - 36674034
Alignment:
| Q |
18 |
caaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagcca |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |
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| T |
36673635 |
caaaattggatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcacagctatgatgcagcca |
36673734 |
T |
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| Q |
118 |
tgataaccctcttgctattccaagtgcaatgtttaccctatgatgccatttcaatcttatgacttcactttgcaaaggatgcaaccatttggaaagcctc |
217 |
Q |
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| T |
36673735 |
tgataaccctcttgctattccaagtgcaatgttgaccctttgatgccatttcaatcttatgacttcactttccgaaggatgcaaccatttggaaagcctt |
36673834 |
T |
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| Q |
218 |
ccatttgacatgtatgagtatgccaagagcctttcctttccttcaatgcagaatccaagcagtggaactaaatttttgtgtctgtacttgcacaaaattg |
317 |
Q |
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| T |
36673835 |
ccatttgacatgtatgcatatgctaaaacctgttcctttcctttaatgcagaacccaagcaggggaactatatttttttgtctgtacttacacaaaatcg |
36673934 |
T |
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| Q |
318 |
ttgtttctaaaaggaactgccttttaaagaggcgagagtcaaatagtctcttaacagctagtaactgaccgttaggtagaaatccttggtacatcattcc |
417 |
Q |
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| T |
36673935 |
ttgtttccaaaaggaactgccttttaaatagccgagagtcaaatattctcttaatagccagtaactgaccattaggaagaaatccttggtacatcattcc |
36674034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 36676390 - 36676789
Alignment:
| Q |
18 |
caaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagcca |
117 |
Q |
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| T |
36676390 |
caaaattggatatttttggttcaaagttctcatctagcaatatgcattctgaacatatgctaaaatgcactatgcccaaatcgcatgtatgatgcagcca |
36676489 |
T |
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| Q |
118 |
tgataaccctcttgctattccaagtgcaatgtttaccctatgatgccatttcaatcttatgacttcactttgcaaaggatgcaaccatttggaaagcctc |
217 |
Q |
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||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36676490 |
tgataaccctcttgctattccaaatgcaatgttgaccctgtcatgccatttcaatcttatgacttcactttccaaaggatgcaaccatttggaaagcctc |
36676589 |
T |
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| Q |
218 |
ccatttgacatgtatgagtatgccaagagcctttcctttccttcaatgcagaatccaagcagtggaactaaatttttgtgtctgtacttgcacaaaattg |
317 |
Q |
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| T |
36676590 |
ccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaagcatgggaactatatttttgtgtctgtacctactcataatcg |
36676689 |
T |
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| Q |
318 |
ttgtttctaaaaggaactgccttttaaagaggcgagagtcaaatagtctcttaacagctagtaactgaccgttaggtagaaatccttggtacatcattcc |
417 |
Q |
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||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
36676690 |
ttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaacagctagtaattgaccattaggcagaaatccttggtacatcattcc |
36676789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 36684063 - 36684462
Alignment:
| Q |
18 |
caaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagcca |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || ||||||| ||||| |
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| T |
36684063 |
caaaattggatattttgggttcaaaattctcatctagcaatatgcattgtgaatatatattaaaatgcactatgcccaaatcacagctatgatggagcca |
36684162 |
T |
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| Q |
118 |
tgataaccctcttgctattccaagtgcaatgtttaccctatgatgccatttcaatcttatgacttcactttgcaaaggatgcaaccatttggaaagcctc |
217 |
Q |
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|||||| |||||||||| ||||||||||||||| ||||| | | ||||||||| || ||||||||||||| |||||| | |||||||||||||||||| |
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| T |
36684163 |
tgataatcctcttgctaatccaagtgcaatgttgaccctctcaggccatttcagtcggatgacttcacttttcaaagggtacaaccatttggaaagcctt |
36684262 |
T |
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| Q |
218 |
ccatttgacatgtatgagtatgccaagagcctttcctttccttcaatgcagaatccaagcagtggaactaaatttttgtgtctgtacttgcacaaaattg |
317 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| | | || ||| | |
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| T |
36684263 |
ccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaagcatgggaactatatttttatgtctgtacctactcataatag |
36684362 |
T |
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| Q |
318 |
ttgtttctaaaaggaactgccttttaaagaggcgagagtcaaatagtctcttaacagctagtaactgaccgttaggtagaaatccttggtacatcattcc |
417 |
Q |
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|||||||||||||||||||||||| ||| || ||| ||| | ||||||||||||| |||||||||||||| || |||||| ||| || ||||||||||| |
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| T |
36684363 |
ttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagatttccctgatacatcattcc |
36684462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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