View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_3 (Length: 666)

Name: NF3114_low_3
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_3
NF3114_low_3
[»] chr4 (2 HSPs)
chr4 (14-647)||(16542630-16543256)
chr4 (11-39)||(36226948-36226976)
[»] chr5 (1 HSPs)
chr5 (85-342)||(10018729-10018987)
[»] chr8 (1 HSPs)
chr8 (85-342)||(42005957-42006222)
[»] chr7 (2 HSPs)
chr7 (85-329)||(49076435-49076685)
chr7 (269-342)||(31284976-31285049)
[»] chr3 (4 HSPs)
chr3 (96-342)||(33819412-33819664)
chr3 (94-241)||(43337353-43337500)
chr3 (306-341)||(16970464-16970499)
chr3 (270-342)||(52643990-52644062)
[»] scaffold0085 (3 HSPs)
scaffold0085 (214-328)||(47509-47624)
scaffold0085 (85-165)||(47402-47482)
scaffold0085 (193-227)||(47482-47516)
[»] chr6 (2 HSPs)
chr6 (270-337)||(29816696-29816763)
chr6 (281-341)||(1881931-1881991)
[»] chr1 (1 HSPs)
chr1 (286-342)||(49171805-49171861)
[»] chr2 (2 HSPs)
chr2 (254-314)||(42491144-42491204)
chr2 (165-222)||(42490426-42490483)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 647
Target Start/End: Original strand, 16542630 - 16543256
Alignment:
Q  14 agactaaattagctaagcaatgcatcgttggaagctagtgcatatgtagcagagctttaaggtgtttgaaggttggcttcattgcgtggttttcataaag 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  16542630 agactaaattaactaagcaatgcatcgttggaagctagtgcatatgtagcagagctttggggtgtttgaaggttggctacattgcgtggttttcataaag 16542729  T
Q  114 tggagttccatattgtttcttgggtagtatctttgacacttgctttaggggaaggaggaactgtagatggttggagattattgcaaaatattagaagatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16542730 tggagttccatattgtttcttgggtagtatctttgacacttgctttaggggaaggaggaactgtagatggttggagattattgcaaaatattagaagatt 16542829  T
Q  214 gttggagttggagtgggagatcaagatttgacattcggatgcaaacaaatgtgtcaatgcgttggcgaatatggcatgtgatggaggttattctttgatg 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16542830 gttggagttggagtgagagatcaagatttgacattcggatgcaaataaatgtgtcaatgcgttggcgaatatgacatgtgatggaggttattctttgatg 16542929  T
Q  314 ttatatgagcattgtcttgctcaaattaaattaatttattatttttggctaactccgttggtatttcgactctatgttttgttatgcggttgttttatcn 413  Q
    ||||||||||||| ||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  16542930 ttatatgagcattatcttgctc-----aaattaatttattatttttggctaactccgttggtatttcgactctatgttttgttatgcggttgttctatc- 16543023  T
Q  414 nnnnnnnnnnggggctaaggccctcttgttatat-nnnnnnnnnntcgaaatctcaggagtttcaacatccacgccattatccatgcatgaattctaaaa 512  Q
              ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16543024 --ttttttttggggctaaggccctcttgttatataaaaaaaaaaatcgaaatctcaggagtttcaacatccacgccattatccatgcatgaattctaaaa 16543121  T
Q  513 cgttactgttattttaagcatcattgtcttcaagaaattccagccagttgtaaaattatgagttctaataatgattttaataagttagaaataatgtgct 612  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16543122 cgttactgttattttaagcatcattgtcttcaagaaattttagccagttgtgaaattatgagttctaataatgattttaataagttagaaataatgtgct 16543221  T
Q  613 ggtgtgtgtctaacaaaagatttctccacactagg 647  Q
    |||||||||||||||||||||||||||| ||||||    
T  16543222 ggtgtgtgtctaacaaaagatttctccaaactagg 16543256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 36226976 - 36226948
Alignment:
Q  11 cagagactaaattagctaagcaatgcatc 39  Q
    |||||||||||||||||||||||||||||    
T  36226976 cagagactaaattagctaagcaatgcatc 36226948  T

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Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 85 - 342
Target Start/End: Original strand, 10018729 - 10018987
Alignment:
Q  85 gttggcttcattgcgtggttttcataaagtggagttccatattgtttcttgggtagtatctttgacacttgctttaggggaaggaggaactgtagatggt 184  Q
    |||||||  ||||||||||||||||||||||||| ||||||||| || ||||| |||| ||| ||||||||||||||| |||||||||||| | ||||||    
T  10018729 gttggctagattgcgtggttttcataaagtggagctccatattgatttttgggcagtagcttcgacacttgctttaggagaaggaggaactctggatggt 10018828  T
Q  185 tggagattattgcaaaatattagaagattgttggagttggagtgggagatcaagatttgacattc------ggatgcaaacaaatgtgtcaatgcgttgg 278  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||       || ||||||||||||||     || |||    
T  10018829 tggagcttattgcaaaatattagaaaattgttggagttggagtgggagatcaagattcaatattcatatcgtgaagcaaacaaatgtgt-----cgatgg 10018923  T
Q  279 cgaatatggcatgtgatggaggttattctttgatgttatatgagcattgtcttgctcaaattaa 342  Q
    | ||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||    
T  10018924 caaatatggcatgagatggaggttattctttgatgttatatgaacattgtcctactcaaattaa 10018987  T

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Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 42006222 - 42005957
Alignment:
Q  85 gttggcttcattgcgtggttttcataaagtggagttccatattgtttcttgggtagtatctttgacacttgctttag-gggaaggaggaactgtagatgg 183  Q
    |||||||  ||||| ||||||||||||||||||| | ||||||| ||||||||  ||| ||| |||||||||||||| |||||||||||| ||| |||||    
T  42006222 gttggctagattgcatggttttcataaagtggagcttcatattgattcttgggctgtagcttcgacacttgctttagagggaaggaggaaatgtggatgg 42006123  T
Q  184 ttggagattattgcaaaatattagaagattgttggagttggagtgggagatcaagatttgacattcg------gatgcaaacaaatgtgtcaatgcgttg 277  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||| | | ||||      || ||||||||||||| | |||| |||    
T  42006122 ttggagcttattgcaaaatattagaagattattggagttggagttggacatcaagattcggcgttcgtatcgtgaagcaaacaaatgtgccgatgctttg 42006023  T
Q  278 gcgaatatggcatgtgat-ggaggttattctttgatgttatatgagcattgtcttgctcaaattaa 342  Q
    ||||||||| ||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  42006022 gcgaatatgacatgtgataagagattattctttgatgttatatgagcattgtcctgctcaaattaa 42005957  T

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Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 85 - 329
Target Start/End: Complemental strand, 49076685 - 49076435
Alignment:
Q  85 gttggcttcattgcgtggttttcataaagtggagttccatattgtttcttgggtagtatctttgacacttgctttaggggaaggaggaactgtagatggt 184  Q
    |||||||  ||||| ||||||| |||||||||||||| |||||| |||||  |||||| ||| |||||| |||||| ||||||  |||| ||| || |||    
T  49076685 gttggctcgattgcatggtttttataaagtggagttcgatattgattcttcagtagtagcttcgacactcgctttatgggaagttggaagtgtggaaggt 49076586  T
Q  185 tggagattattgcaaaatattagaagattgttggagttggagtgggagatcaagatttgacattcg------gatgcaaacaaatgtgtcaatgcgttgg 278  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| ||||||||      || |||||||||||||| ||||||||||    
T  49076585 tggagcttattgcaaaatattagaagattattggagttgaagtggaagatcgagattcgacattcgtatcgtgaagcaaacaaatgtgttaatgcgttgg 49076486  T
Q  279 cgaatatggcatgtgatggaggttattctttgatgttatatgagcattgtc 329  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  49076485 cgaatatgacatgtgataaaggttattctttgatgttatatgagcattgtc 49076435  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 31285049 - 31284976
Alignment:
Q  269 aatgcgttggcgaatatggcatgtgatggaggttattctttgatgttatatgagcattgtcttgctcaaattaa 342  Q
    ||||| ||||||||| | ||||||||||| |||| | || |||| ||||||||||| |||| ||||||| ||||    
T  31285049 aatgctttggcgaatttagcatgtgatggtggttttactatgattttatatgagcaatgtcctgctcaagttaa 31284976  T

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Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 96 - 342
Target Start/End: Complemental strand, 33819664 - 33819412
Alignment:
Q  96 tgcgtggttttcataaagtggagttccatattgtttcttgggtagtatctttgacacttgctttaggggaaggaggaactgtagatggttggagattatt 195  Q
    |||||| |||||||||||||||| ||||||||| || || ||||||| ||| | |||| |||||| |||||||||| | ||| ||| ||||||| ||  |    
T  33819664 tgcgtgcttttcataaagtggagctccatattgatttttcggtagtagcttcgtcactcgctttaagggaaggagggagtgtggattgttggagcttgct 33819565  T
Q  196 gcaaaatattagaagattgttggagttggagtgggagatcaagatttgacattcg------gatgcaaacaaatgtgtcaatgcgttggcgaatatggca 289  Q
     |||||||||| |||||| ||||||||||||||||||||||||||| | ||||||      || | |||||||| |||| ||| ||||||||||| ||||    
T  33819564 ccaaaatattataagattattggagttggagtgggagatcaagattcggcattcgtatcgtgaagaaaacaaatatgtcgatgtgttggcgaataaggca 33819465  T
Q  290 tgtgatggaggttattctttgatgttatatgagcattgtcttgctcaaattaa 342  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  33819464 tgtgatggaggttattctttgatgttatatgagcattgtcctgctaaaattaa 33819412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 43337353 - 43337500
Alignment:
Q  94 attgcgtggttttcataaagtggagttccatattgtttcttgggtagtatctttgacacttgctttaggggaaggaggaactgtagatggttggagatta 193  Q
    |||| ||||||||  ||||||| |  ||||||||  ||||||| ||||| ||| ||||||||||||||| || ||||||||||| ||||||||||| |||    
T  43337353 attgtgtggtttttgtaaagtgcatctccatattaattcttggatagtagcttcgacacttgctttaggagatggaggaactgtggatggttggagctta 43337452  T
Q  194 ttgcaaaatattagaagattgttggagttggagtgggagatcaagatt 241  Q
    ||||||||||||| |||||| ||| ||||||||||| |||||||||||    
T  43337453 ttgcaaaatattaaaagattattgaagttggagtggaagatcaagatt 43337500  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 16970499 - 16970464
Alignment:
Q  306 ctttgatgttatatgagcattgtcttgctcaaatta 341  Q
    |||||||||||||||||||||||| |||||||||||    
T  16970499 ctttgatgttatatgagcattgtcctgctcaaatta 16970464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 52643990 - 52644062
Alignment:
Q  270 atgcgttggcgaatatggcatgtgatggaggttattctttgatgttatatgagcattgtcttgctcaaattaa 342  Q
    |||| ||||||||| ||||||||||||| |||| | ||  ||| ||||||||||| |||| ||||||| ||||    
T  52643990 atgctttggcgaatttggcatgtgatggtggttttactacgattttatatgagcaatgtcctgctcaagttaa 52644062  T

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Target: scaffold0085 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 47509 - 47624
Alignment:
Q  214 gttggagttggagtgggagatcaagatttgacattcggat-gcaaacaaatgtgtcaatgcgttggcgaatatggcatgtgatggaggttattctttgat 312  Q
    |||||||||||||||||||||||||||| | |||||| |  |||||||||| || | || |||||||||||||| ||||||||||||||| |||||||||    
T  47509 gttggagttggagtgggagatcaagattcggcattcgtaaagcaaacaaatatgccgatacgttggcgaatatgacatgtgatggaggtttttctttgat 47608  T
Q  313 gttatatgagcattgt 328  Q
     |||||||||||||||    
T  47609 attatatgagcattgt 47624  T

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Target: scaffold0085; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 47402 - 47482
Alignment:
Q  85 gttggcttcattgcgtggttttcataaagtggagttccatattgtttcttgggtagtatctttgacacttgctttagggga 165  Q
    |||||||  |||| |||||||||||||||||||||| ||||||| ||||| | |||||  || ||||||||||||||||||    
T  47402 gttggctagattgtgtggttttcataaagtggagtttcatattgattcttagatagtagtttggacacttgctttagggga 47482  T

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Target: scaffold0085; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 47482 - 47516
Alignment:
Q  193 attgcaaaatattagaagattgttggagttggagt 227  Q
    |||||||||||| ||||||||||||||||||||||    
T  47482 attgcaaaatatgagaagattgttggagttggagt 47516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 29816763 - 29816696
Alignment:
Q  270 atgcgttggcgaatatggcatgtgatggaggttattctttgatgttatatgagcattgtcttgctcaa 337  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  29816763 atgcgttggcgaatatgacatgtgatgaaggttattatttgatgttatatgagcattgtcttgctcaa 29816696  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 1881991 - 1881931
Alignment:
Q  281 aatatggcatgtgatggaggttattctttgatgttatatgagcattgtcttgctcaaatta 341  Q
    ||||| || ||||||||||| |   |||||||||||||||||||||||| |||||||||||    
T  1881991 aatatagcttgtgatggaggattcactttgatgttatatgagcattgtcctgctcaaatta 1881931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 49171805 - 49171861
Alignment:
Q  286 ggcatgtgatggaggttattctttgatgttatatgagcattgtcttgctcaaattaa 342  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49171805 ggcatgtgatggaggttattctttgatgttatatgagcattgtcgtgctcaaattaa 49171861  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 42491144 - 42491204
Alignment:
Q  254 gcaaacaaatgtgtcaatgcgttggcgaatatggcatgtgatggaggttattctttgatgt 314  Q
    ||||| ||||||| | ||||| || |||||||||||||||||||||||  |||||||||||    
T  42491144 gcaaataaatgtgccgatgcgctgacgaatatggcatgtgatggaggtgtttctttgatgt 42491204  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 42490426 - 42490483
Alignment:
Q  165 aaggaggaactgtagatggttggagattattgcaaaatattagaagattgttggagtt 222  Q
    ||||||||  ||| ||||||||||| ||||||||||||||||  |||||| |||||||    
T  42490426 aaggaggagttgtggatggttggagcttattgcaaaatattaagagattggtggagtt 42490483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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