View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_30 (Length: 400)
Name: NF3114_low_30
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 38136029 - 38136399
Alignment:
| Q |
14 |
aaatattggataagaaagatacagtaaattatatagcatacaactgaatgacatttcaaatgataagtttcttacacaattaaacatagaaaccaataca |
113 |
Q |
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| T |
38136029 |
aaatattggataagaaagatacaataaattacatagcatacaactgaatgacatttcaaatgataagtttcttacacaattaaacatagaaaccaataca |
38136128 |
T |
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| Q |
114 |
ttcactgtctacctcaagctcgtaagaatataaataatttgaaaattgtttgcagtccttcaataaatcttctaattcacttggtaaaattagttggaaa |
213 |
Q |
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| T |
38136129 |
ttcactgtctacctcaagctcgtaaaaatataaataatttgaaaattgtttgcagtccttcaataaatcttctaattcacatggtaaaattagttggaaa |
38136228 |
T |
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| Q |
214 |
gaaacaaaccaaacctgtttgtaagtcataattgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaagttctcc |
313 |
Q |
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| T |
38136229 |
gaaacaaaccaaacctgtttgtaagtcatagttgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaacttctcc |
38136328 |
T |
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| Q |
314 |
aaatatcaggaactgttttccactcatccgagacgacaccatcattaccagaaagcaatgaactttctaat |
384 |
Q |
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| T |
38136329 |
aaatatcaggaactgttttccactcatccgagacgacaccatcattaccagaaagcaatgaactttctaat |
38136399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 38123027 - 38123144
Alignment:
| Q |
224 |
aaacctgtttgtaagtcataattgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaagttctccaaatatcagg |
323 |
Q |
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| T |
38123027 |
aaacctgtttgtatgtcatagttgaaggaggatcatgatattgatctaccaaagctactttatcaccatacttctctgcagaagttctccaaatatcagg |
38123126 |
T |
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| Q |
324 |
aactgttttccactcatc |
341 |
Q |
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| T |
38123127 |
aacagctttccactcatc |
38123144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 35105434 - 35105339
Alignment:
| Q |
245 |
ttgaaggaggatcatgatatggatctatgagagcaattttatcaccatacttctcagcagaagttctccaaatatcaggaactgttttccactcat |
340 |
Q |
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| T |
35105434 |
ttgaaggaggatgatgatattgatctactaaggctactttatcaccatatttttcagcagaagatctccaaatatcaggaacaactttccactcat |
35105339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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