View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_31 (Length: 398)
Name: NF3114_low_31
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 44737215 - 44736826
Alignment:
| Q |
1 |
atatcacatgacgttgaaaaatataacaacacaacttaacatcccaccaaccgtgttttccgcccggaagcaaatttgattggctctaaagattaattca |
100 |
Q |
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| T |
44737215 |
atatcacatgacgttgaaaaatatatcaacacaacttaacatcccaccccccgtgttttccgcccggaagcaaatttgattggctctaaagattaattca |
44737116 |
T |
|
| Q |
101 |
tgatgcattttttgctttatatagcggtcctcaataatccaagctatccgaatcaatgtagtctcattcacgaatttatcaaaatttgaacaaacgagtt |
200 |
Q |
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| T |
44737115 |
tgaggcatttttcgttttatataacagtcctcaataatccaagctatccgaatcaacgtagtctcattcacgaatttttcaaaatttgaacaaacgagtt |
44737016 |
T |
|
| Q |
201 |
gattcattttgagaaatgttgttatatagtgcgaaggaaaaaagcacgaaaaacacatgatgcatgtgaatggtagcatcatattctgtttcttcgttca |
300 |
Q |
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| T |
44737015 |
gattcattttgaggaatgttgttatatagtgcgaaggaaaaaagcacgaaaaacacatgatgcatgtgaatggtagcatcatattctgtttcttcgttca |
44736916 |
T |
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| Q |
301 |
tttgtaacatctcaaaacacaaatttgtacgtattattacatattaaaattcaatttcgataacctttctctggttt-cctatcaatatt |
389 |
Q |
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| T |
44736915 |
tttgtaacatcttaaaacacaaatttgtacgtattattacatattaaaattcaatttcgataacctttctatggtttccctatcaatatt |
44736826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 32319011 - 32319095
Alignment:
| Q |
1 |
atatcacatgacgttgaaaaatataacaacacaacttaacatcccaccaaccgtgttttccgcccggaagcaaatttgattggct |
85 |
Q |
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||||||| |||||| |||||||||| |||| ||||||||||||| || | ||||||||| |||| || |||||| |||||||| |
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| T |
32319011 |
atatcacgtgacgtggaaaaatatatcaactcaacttaacatccttcccagcgtgttttctgcccataaacaaattcgattggct |
32319095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 7410276 - 7410207
Alignment:
| Q |
16 |
gaaaaatataacaacacaacttaacatcccaccaaccgtgttttccgcccggaagcaaatttgattggct |
85 |
Q |
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||||||||||||||| ||||||| ||||| || |||||||||||| ||| || ||||||| ||||||| |
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| T |
7410276 |
gaaaaatataacaactcaacttagcatccttcctaccgtgttttcctcccataaacaaatttaattggct |
7410207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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