View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_32 (Length: 398)
Name: NF3114_low_32
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 153 - 387
Target Start/End: Original strand, 45696498 - 45696727
Alignment:
| Q |
153 |
aagaccaataatatgagacaatactcctattaactaagcacacttgtcttcatataaataacaaagcctccaagtaacgccatttcaccacctctgttaa |
252 |
Q |
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| T |
45696498 |
aagaccaataatatgagacaatactcctattaactaagcacacttgtcttcatataagtaacaaagcctccaagtaacgccatttcaccagctctgttaa |
45696597 |
T |
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| Q |
253 |
caacaaaacaaaacaaaagagcaatcacaatgcttgagttcgttctattctacaagaacccattactccacgcatcactctccataatcctcgctttaac |
352 |
Q |
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| T |
45696598 |
caaca-----aaacaaaagagcagtcacaatgcttgagttcgttctattctacaagaacccattactccacgcatcactctccataatcctcgctttaac |
45696692 |
T |
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| Q |
353 |
cctagccttcttcagaatcccaatcctcttcctct |
387 |
Q |
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| T |
45696693 |
cctatccttcttcagaatcccaatcctctttctct |
45696727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 45696328 - 45696498
Alignment:
| Q |
21 |
aaaaatgagtctttaannnnnnnacatttttggtttatgaaaagaagacaa--gaataagaccttttttggtgattgtcgggattcaaactccaaacctt |
118 |
Q |
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| T |
45696328 |
aaaaatgagtctttaatttttttacatttttggtttatgaaaagaagacaaacgaataagaccttttttggtggttgtcgggattcaaacagcagatct- |
45696426 |
T |
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| Q |
119 |
acaataaattaagttcacgatcgcacaaacgaataagaccaataatatgagacaatactcctattaactaagcaca |
194 |
Q |
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| T |
45696427 |
----tgagttaagttcacgaccgcacaaccgaacaagaccaataatatgagacaatactcttattaactaagcaca |
45696498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 27674414 - 27674378
Alignment:
| Q |
82 |
ttttttggtgattgtcgggattcaaactccaaacctt |
118 |
Q |
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| T |
27674414 |
ttttttggtgatggtcgggattcaaacaccaaacctt |
27674378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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