View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_35 (Length: 378)
Name: NF3114_low_35
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 7353419 - 7353070
Alignment:
| Q |
18 |
ataatgaattgcatttcatggaataatagattgtggtggattttactgcttcatggtgtggtccatgccgttttattgctccaattctagctgagattgc |
117 |
Q |
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| T |
7353419 |
ataatgaattgcatttcattgaataatagattgtggtggattttactgcttcatggtgtggtccatgccgttttattgctccaattctagctgagattgc |
7353320 |
T |
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| Q |
118 |
taagaagacacctgaagtcatcttcctcaaggtggatattgatgaagtaaaggtataaccatatcttaatctatattaccttattctttctcaagcttaa |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7353319 |
taagaagatacctgaagtcatcttcctcaaggtggatattgatgaagtaaaggtataaccatatcttaatctatattaccttattctttctcaagtttaa |
7353220 |
T |
|
| Q |
218 |
tacatgcttaaaatcacgttgagtttgaagaaatcacaacttcaacgagattttgttgaaactctgaagtgtagcttttgtcaaaatcgcagtaggacat |
317 |
Q |
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| T |
7353219 |
tacatgcttaaaatcacgttgagtttgaagaaatcacaacttcaacgagattttgatgaaactctgaagtgtagcttttgtcaaaatcacagtaggacat |
7353120 |
T |
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| Q |
318 |
cataattctgccaaactaagataacacaatcaaagtttaccatgttctgt |
367 |
Q |
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| T |
7353119 |
catgattctgccaaactcagataacacaatcaaaatttaccatgttctgt |
7353070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 8135624 - 8135675
Alignment:
| Q |
45 |
agattgtggtggattttactgcttcatggtgtggtccatgccgttttattgc |
96 |
Q |
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| T |
8135624 |
agattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgc |
8135675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 35027529 - 35027567
Alignment:
| Q |
267 |
attttgttgaaactctgaagtgtagcttttgtcaaaatc |
305 |
Q |
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| T |
35027529 |
attttgttgaagctctgaagtgtagcttttatcaaaatc |
35027567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 52667064 - 52666946
Alignment:
| Q |
45 |
agattgtggtggattttactgcttcatggtgtggtccatgccgttttattgctccaattctagctgagattgctaagaagacacctgaagtcatcttcct |
144 |
Q |
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| T |
52667064 |
agattgtagttgatttcactgcttcttggtgtggcccgtgccgtttcattgccccaattttggcagagattgctaaaaagctgccaaatgtcaccttcct |
52666965 |
T |
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| Q |
145 |
caaggtggatattgatgaa |
163 |
Q |
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| T |
52666964 |
caaggttgatgttgatgaa |
52666946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 30007467 - 30007510
Alignment:
| Q |
266 |
gattttgttgaaactctgaagtgtagcttttgtcaaaatcgcag |
309 |
Q |
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| T |
30007467 |
gattttgttgaagctctgaagtgtaacttttgacaaaatcgcag |
30007510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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