View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_38 (Length: 367)
Name: NF3114_low_38
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 30614209 - 30614546
Alignment:
| Q |
11 |
cagagaccgcgaaacagaaacatgtaatgatgatggtgcattattcccatatcagtgtctaggcatagaaatgtggaaatgagattcttcgggttgtttt |
110 |
Q |
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| T |
30614209 |
cagagacagcgaaacagaaacatgtaatgatgatggtgcattattcccatatcagtgtctaggcatagaaatgtggaaatgagattcttcgggttgtttt |
30614308 |
T |
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| Q |
111 |
cttaagttacattctcttcaatgaattata--acttgtggtatgatgaacatcatatttgagcttgatcgtaaacaagtaattgatatttgataatttgc |
208 |
Q |
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| T |
30614309 |
cttaagttacattctcttcgatgaattatataacttgtggtatgatgaacatcatatttgagcttgatcgtaaacaagtaattgatatttgataattttc |
30614408 |
T |
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| Q |
209 |
ttaatgtaaaacataatagatcagaatatgattctattagtgagggttgtagggcaattttagtgctaacaggaacttacaatagttatttttgttagac |
308 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30614409 |
ttaatgtaaaacttaatagatcagaatatgattctattagtgagggttgtagggccattttagtgctaacaggaacttacgatagttatttttgttagac |
30614508 |
T |
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| Q |
309 |
gacaatctaatagtagcactctctttgaaaagggtgtc |
346 |
Q |
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| T |
30614509 |
gacaatctaatagtagcactgtctttgaaaagggtgtc |
30614546 |
T |
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