View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_40 (Length: 358)
Name: NF3114_low_40
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 342
Target Start/End: Complemental strand, 52824640 - 52824433
Alignment:
| Q |
137 |
gatatgatagtttgatgatgtgaaaagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgat |
236 |
Q |
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| T |
52824640 |
gatatgacagtttgatgatgtgaaaagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgat |
52824541 |
T |
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| Q |
237 |
atatatata--ataagatgtgacaatgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgat |
334 |
Q |
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| T |
52824540 |
atatatatataataagatgtgacaatgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgat |
52824441 |
T |
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| Q |
335 |
ctgttatc |
342 |
Q |
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| T |
52824440 |
ctgttatc |
52824433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 52824773 - 52824696
Alignment:
| Q |
14 |
aggagcacagaaacaaacaaaatattcatactagagctacatcaacgttttgtgtaca-ccctgtagtgtatacatct |
90 |
Q |
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| T |
52824773 |
aggagcacaaaaacaaacaaaatattcatactagagctacatcaacgttttgtgtacacccctgtagtgtatacatct |
52824696 |
T |
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