View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_42 (Length: 341)
Name: NF3114_low_42
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_42 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 32649490 - 32649321
Alignment:
| Q |
11 |
tgaagcaataaagaacaaggagtagaactttctattataactaattagtttgatagcctgccaatcgttatccttatgcaattcctgatggttaatatca |
110 |
Q |
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| T |
32649490 |
tgaagcaataaagaacaaggagtagaactttctactataactaattagtttgatagcctgccaattgttatccttatgcaattcctgatggttaatatct |
32649391 |
T |
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| Q |
111 |
ttgtatgcaggccattccgattataaagttgaggatgcatgttgttcatggtggttaaatttaatgtgtt |
180 |
Q |
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| T |
32649390 |
atgtatgcaggccattccgattataaagttgaggatgcatgttgttcatggtggttaaatttaatgtgtt |
32649321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 32649281 - 32649169
Alignment:
| Q |
180 |
tctaatgactaaatatactgtcacataagtttagtgaaacaacaaaacacactacgttacat-cgtatatcacgagaccacacataagtctgtaacaaca |
278 |
Q |
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| T |
32649281 |
tctaatgactaagtatactgtcacataagtttagtgacacaacaaaacacacaacgctacattcgtatatcacgagaccacacataagtttgtaacaaca |
32649182 |
T |
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| Q |
279 |
gacatattctctg |
291 |
Q |
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| T |
32649181 |
gacatattctctg |
32649169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 32649164 - 32649095
Alignment:
| Q |
269 |
tgtaacaacagacatattctctgtgaaaagttcattcatactaaaatatatttcaaataatgtcttaaac |
338 |
Q |
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| T |
32649164 |
tgtaacaacagacatattttctgcgaaaagttcattcatactacaatatatttcaagtaatgtcttaaac |
32649095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 341
Target Start/End: Complemental strand, 22136449 - 22136316
Alignment:
| Q |
209 |
tttagtgaaacaacaaaacacactacgttacatc----gtatatcacgagaccacacataagtctgtaacaacagacatattctctgtgaaaagttcatt |
304 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| || |
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| T |
22136449 |
tttagtggaacagcaaaacacactacgttacatttgtagtatatcacgagaccacacataagtttgtaacaacagacatattctctgcgacaagt---tt |
22136353 |
T |
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| Q |
305 |
catactaaaatatatttcaaataatgtcttaaactat |
341 |
Q |
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| T |
22136352 |
catactacaatatatttcgagtaatgtcttaaactat |
22136316 |
T |
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