View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_low_43 (Length: 337)
Name: NF3114_low_43
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 26887363 - 26887033
Alignment:
| Q |
1 |
taaacttagctacattttgctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887363 |
taaacttagctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaa |
26887264 |
T |
|
| Q |
101 |
atgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887263 |
atgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttctt |
26887164 |
T |
|
| Q |
201 |
gagctgcaagttaagataaaaacattagaaaacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26887163 |
gagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtt |
26887064 |
T |
|
| Q |
301 |
tgtccaataacttgctagatctggtctctgc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26887063 |
tgtccaataacttgctagatctggtctctgc |
26887033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 51855061 - 51855391
Alignment:
| Q |
1 |
taaacttagctacattttgctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855061 |
taaacttagctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaa |
51855160 |
T |
|
| Q |
101 |
atgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51855161 |
atgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttatccaaaattgttctt |
51855260 |
T |
|
| Q |
201 |
gagctgcaagttaagataaaaacattagaaaacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51855261 |
gagctgcaagttaagataaaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtt |
51855360 |
T |
|
| Q |
301 |
tgtccaataacttgctagatctggtctctgc |
331 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
51855361 |
tgtccaataacttgctagatctgatctctgc |
51855391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 37 - 331
Target Start/End: Complemental strand, 35043384 - 35043090
Alignment:
| Q |
37 |
cattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttcttttccatggccttcttatc |
136 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35043384 |
cattagaattaagtctttcttcatggctcctaaatagagcatcagtatagtgtgcaagatgaaaatgagtttgacatttcttttccatggccttcttatc |
35043285 |
T |
|
| Q |
137 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagataaaaacattagaaaacatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
35043284 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacaggagaagacatg |
35043185 |
T |
|
| Q |
237 |
aactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtttgtccaataacttgctagatctggtctctgc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35043184 |
aactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattcagtttgtccaataacttgctagatctggtctctgc |
35043090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 8944296 - 8944626
Alignment:
| Q |
1 |
taaacttagctacattttgctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944296 |
taaacttagctacattttgctctttgatccttccaccattagaatcaagtatttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaa |
8944395 |
T |
|
| Q |
101 |
atgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttctt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
8944396 |
atgggtattacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagaaactgtaggtttcaaatacttctccaaaattgttctt |
8944495 |
T |
|
| Q |
201 |
gagctgcaagttaagataaaaacattagaaaacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8944496 |
gagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatccattatttaaacattaaacagaattaagtt |
8944595 |
T |
|
| Q |
301 |
tgtccaataacttgctagatctggtctctgc |
331 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
8944596 |
tgtccaataacttgctacatctggtctctgc |
8944626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21989037 - 21989075
Alignment:
| Q |
1 |
taaacttagctacattttgctctttgatccttccaccat |
39 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21989037 |
taaacttagctacatttgactctttgatccttccaccat |
21989075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University