View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_46 (Length: 334)
Name: NF3114_low_46
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_46 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 37814245 - 37813922
Alignment:
| Q |
12 |
aatatccattgcaaatgaagaagataacaacaacaacgacaacaatattgctcaaatgaagaatgaaacaaatacccatcttgnnnnnnnnnnnn-ctta |
110 |
Q |
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| T |
37814245 |
aatatccattgcaaatgaagaagataacaacaacaacgacaacaatattgctcaaatgaagaatgaaacaaatacccatcttgaaaaaaataaaaactta |
37814146 |
T |
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| Q |
111 |
tcctttgttccaattacttccaacccaaaggacaaaaataataagcaaataaaaagtgaccatgatattaagaagatggttcatagcatcaaagtaggaa |
210 |
Q |
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| T |
37814145 |
tcctttgttccaattacttccaacccaaaggacaaaaataataagcaaataaaaagtgaccatgatattaagaagatggttcatagcatcaaagtaggaa |
37814046 |
T |
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| Q |
211 |
tctcacttgttttggtatcacttctttacattttgaatcctctctttgatcaagttggtgaaaatgcaatgtgggctatcatgactgttgttgtcatctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37814045 |
tctcacttgttttggtatcacttctttacattttgaatcctctctttgatcaagttggtgaaaatgcaatgtgggctatcatgactgttgttgtcatctc |
37813946 |
T |
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| Q |
311 |
tgaattcaatgcaggtatatactt |
334 |
Q |
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| T |
37813945 |
tgaattcaatgcaggtatatactt |
37813922 |
T |
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