View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_47 (Length: 334)

Name: NF3114_low_47
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_47
NF3114_low_47
[»] chr4 (8 HSPs)
chr4 (1-318)||(38220778-38221095)
chr4 (2-318)||(38243627-38243943)
chr4 (1-318)||(38214736-38215056)
chr4 (2-318)||(38227160-38227476)
chr4 (1-318)||(38248774-38249091)
chr4 (2-318)||(38253890-38254206)
chr4 (1-184)||(38238688-38238871)
chr4 (279-318)||(38238936-38238975)
[»] chr6 (2 HSPs)
chr6 (1-318)||(17434289-17434603)
chr6 (1-318)||(17455389-17455706)
[»] chr1 (1 HSPs)
chr1 (43-140)||(21546676-21546773)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38220778 - 38221095
Alignment:
Q  1 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220778 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 38220877  T
Q  101 gcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220878 gcaggattacctatctctataccaaaaggatccggaatatcagtcgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcct 38220977  T
Q  201 cgcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatct 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220978 ggcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatct 38221077  T
Q  301 ttcaacaacccaatgatg 318  Q
    ||||||||||||||||||    
T  38221078 ttcaacaacccaatgatg 38221095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 318
Target Start/End: Original strand, 38243627 - 38243943
Alignment:
Q  2 cacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctg 101  Q
    ||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || |||| |||| | |||||  ||||||||| || |||||    
T  38243627 cacttacactcagtgcaccctaacttatcctctacgccacgtgtatcaatggcatgaacattaagcacccatttatcctcggacccttctgaaacctctg 38243726  T
Q  102 caggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcctc 201  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||  ||||||||||||  |    || || |||     
T  38243727 caggattacctatctctataccaaaaggatccggaatatctgttgctgttcctcgtgtttcggatccaatgccaaagtattgtccaagagtatttccctg 38243826  T
Q  202 gcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatctt 301  Q
     ||||| ||||||||||| ||  | | | ||| |||| ||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38243827 acatatgccactgttcctcactttcacaatattagaactttgaagcatccttttgccatcatttcttgtgtgtgtgacatgtttactttgatgatatctt 38243926  T
Q  302 tcaacaacccaatgatg 318  Q
     ||||| ||||||||||    
T  38243927 ccaacaccccaatgatg 38243943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38214736 - 38215056
Alignment:
Q  1 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 100  Q
    |||||| ||||| || |||||||||||||||||  ||||||||||||| ||||||||||| || | || |||| |||||||| |||||||||||||||||    
T  38214736 acacttacactcggtgcaccctaacttatcctctgcgccgcgcgtatcgatggcatgaacattaaccaaccatttctcctcaaacccttctggaatctct 38214835  T
Q  101 gcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcct 200  Q
     |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||| |||  | | | | |||| |    
T  38214836 tcaggattacctatctctataccaaaaggatccggaatatctgttgctgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttctt 38214935  T
Q  201 cgcatataccactgttccttaccataatattat---cagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgata 297  Q
      ||||| |||||||| || || | || || ||   |||| |||| | ||||| | |||| |||||||  ||||||||| |||||||| |||||||||||    
T  38214936 gacatatgccactgtttctcacaagaacatgatcagcagagttttgaagcatcctgtggctatcattttctgtgtgtgtaacatgttttctttgatgata 38215035  T
Q  298 tctttcaacaacccaatgatg 318  Q
    |||| ||||| ||||||||||    
T  38215036 tcttccaacagcccaatgatg 38215056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 318
Target Start/End: Original strand, 38227160 - 38227476
Alignment:
Q  2 cacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctg 101  Q
    |||||||||||||| |||||||| ||||||||  |||| |||||||||||||||||||| || |||| |||| | |||||| |||||| ||||||||||     
T  38227160 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctctt 38227259  T
Q  102 caggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcctc 201  Q
    |||||||||||||||||||||| |||||||| |||||||| |||| ||| ||||||||||| || ||||| ||||||||||||  | |   | || |||     
T  38227260 caggattacctatctctataccgaaaggatctggaatatctgttgtcgttcctcgtgtttctgacccaagtccaaagtattgtgaaatagcatttccctg 38227359  T
Q  202 gcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatctt 301  Q
    |||||| |||||||||||||| | || || |||||| |||| | ||||| | |||| | ||| |  |||||||||||||| ||| ||||||| || ||||    
T  38227360 gcatatgccactgttccttacaagaacatgatcagagttttgaagcatcatgtggctaacatcttctgtgtgtgtgacatattttctttgataatgtctt 38227459  T
Q  302 tcaacaacccaatgatg 318  Q
    | ||||| |||||||||    
T  38227460 tgaacaagccaatgatg 38227476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38248774 - 38249091
Alignment:
Q  1 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 100  Q
    |||||| || ||||| |||||||| ||||||||   ||| |||||||| ||||||||||| || |||| |||| |||||||| |||||||||||||||||    
T  38248774 acacttacattcagtgcaccctaatttatcctctgtgccacgcgtatcgatggcatgaacattaagcaaccatttctcctcaaacccttctggaatctct 38248873  T
Q  101 gcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcct 200  Q
     ||||| ||||| ||||||||||||||||||| |||||||| |||| ||| ||||||||||| |||||||| ||||||||||||  | |  || || |||    
T  38248874 tcaggactacctgtctctataccaaaaggatctggaatatctgttgtcgttcctcgtgtttctgatccaaggccaaagtattgtggaatggtatttccct 38248973  T
Q  201 cgcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatct 300  Q
     |||||| |||||||||||||| | || || |||| | |||| | ||||| | |||| | ||| |  |||||||||||||| ||| ||||||| || ||     
T  38248974 ggcatatgccactgttccttacaagaacatgatcatagttttgaagcatcatgtggctaccatcttctgtgtgtgtgacatattttctttgataatgtca 38249073  T
Q  301 ttcaacaacccaatgatg 318  Q
    |||||||| |||||||||    
T  38249074 ttcaacaagccaatgatg 38249091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 2 - 318
Target Start/End: Original strand, 38253890 - 38254206
Alignment:
Q  2 cacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctg 101  Q
    ||||| ||||| || |||||||||||||||||  | || || ||||| ||||||||||| || | ||||||| |||| ||| |||||||||||| |||||    
T  38253890 cacttacactcggtgcaccctaacttatcctctgcacctcgtgtatcgatggcatgaacattaaccatccatttctcatcaaacccttctggaacctctg 38253989  T
Q  102 caggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatacttt-cct 200  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||    || |||| |||||| |||||||| ||||||||||||  |   ||| ||| |||    
T  38253990 caggattacctacctctataccaaaagggtccggaatatctgtcagtgttcctcttgtttcggatccaaggccaaagtattgtcca-agataatttccct 38254088  T
Q  201 cgcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatct 300  Q
     |||||| |||||||| || || | || || |||||| ||||   ||||| | |||| |||||||  ||||||||| |||||||| ||||||||||||||    
T  38254089 ggcatatgccactgtttctcacaagaacatgatcagagttttgtagcatcatgtggctatcattttctgtgtgtgtaacatgttttctttgatgatatct 38254188  T
Q  301 ttcaacaacccaatgatg 318  Q
    | ||||||||||||||||    
T  38254189 tccaacaacccaatgatg 38254206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 38238688 - 38238871
Alignment:
Q  1 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 100  Q
    |||||| |||||||| |||||||| |||||||    ||| |||||||| ||||||||||| || |||| |||| | || | | |||||||||||||||||    
T  38238688 acacttacactcagtgcaccctaatttatcctttgtgcctcgcgtatcgatggcatgaacattaagcaaccatttttcgtgaaacccttctggaatctct 38238787  T
Q  101 gcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgt 184  Q
     ||||||| |||||||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||| ||||||||||||    
T  38238788 tcaggattgcctatctctataccgaaaggatccggaatatcggtcgccgttccacgtgtttcggatccaaggccaaagtattgt 38238871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 38238936 - 38238975
Alignment:
Q  279 catgtttactttgatgatatctttcaacaacccaatgatg 318  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  38238936 catgtttactttgatgatatcttacaacaagccaatgatg 38238975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 17434289 - 17434603
Alignment:
Q  1 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 100  Q
    ||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||||||||||  || | || |||  |||||||| ||||||||||||| |||    
T  17434289 acacttgcattcagtgcaccctaacttatcctctacgccacgtgtatcgatggcatgaatattaaacaaccacttctcctcaaacccttctggaatatct 17434388  T
Q  101 gcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcct 200  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| | ||| ||||||||||| |||||||| || || || |||  |   |||  | |||    
T  17434389 gcaggattacctatctctataccaaaaggatctggaatgtcagtcggcgttcctcgtgtttcggatccaaggccgaaatactgtggaagaatatctgcct 17434488  T
Q  201 cgcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatct 300  Q
     |||||| ||| |||||||||| | || || |||||| |||| | ||||| | |||| |||||||  ||||| ||||||||||   ||| ||||||||||    
T  17434489 ggcatatgccattgttccttacaagaacataatcagagttttgaagcatcctatggctatcattttctgtgtatgtgacatgt---cttagatgatatct 17434585  T
Q  301 ttcaacaacccaatgatg 318  Q
    | ||||||||||||||||    
T  17434586 tgcaacaacccaatgatg 17434603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 17455389 - 17455706
Alignment:
Q  1 acacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctct 100  Q
    ||||||||||||||| ||||||| ||||||||| ||||| || ||||| ||||||||||  || | || |||| |||||||| ||||||||||||| |||    
T  17455389 acacttgcactcagtgcaccctagcttatcctctacgccacgtgtatcgatggcatgaatattaaacaaccatttctcctcaaacccttctggaatttct 17455488  T
Q  101 gcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttcagatccaagcccaaagtattgtttatttatactttcct 200  Q
    |  |||||||| ||||| ||||||||||||||||||||||| || |  || ||||||||||| |||||||| || || || |||  |   ||| || | |    
T  17455489 gttggattacccatctccataccaaaaggatccggaatatcggtcggtgttcctcgtgtttctgatccaaggccgaaatactgtggaagaatatttcctt 17455588  T
Q  201 cgcatataccactgttccttaccataatattatcagaattttcaggcatcttttggccatcatttcttgtgtgtgtgacatgtttactttgatgatatct 300  Q
     ||| || ||||||||||| || | |     || ||  |||| | ||||||| || | |||||||  |||||||||| |||| |||||||||||||||||    
T  17455589 ggcaaatgccactgttcctcacgagacctggataagctttttgaagcatcttgtgactatcattttctgtgtgtgtggcatgattactttgatgatatct 17455688  T
Q  301 ttcaacaacccaatgatg 318  Q
    | ||||||||||||||||    
T  17455689 tccaacaacccaatgatg 17455706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 21546773 - 21546676
Alignment:
Q  43 cgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccggaatat 140  Q
    ||||||||| |||||||| || | || |||| ||||| ||||||||| |||||| || ||||||||||| |  ||||||||| |||| || |||||||    
T  21546773 cgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggattaccaacttctataccataagggtctggaatat 21546676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University