View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_48 (Length: 332)
Name: NF3114_low_48
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 40056853 - 40056551
Alignment:
| Q |
12 |
atgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40056853 |
atgaaatagacaaacacatcccttacttgttaacaccgttgctttttcgttaattttcacacatattgatccatcttcctcactcatcctttccttgtcg |
40056754 |
T |
|
| Q |
112 |
tagttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgatttgtcgtcttttcacttaaaaatttgcattgcagaacaaagt |
211 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
40056753 |
ttgttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgatttgtcgtc-gttcacttaaaaatatgcattgcagaacaaagt |
40056655 |
T |
|
| Q |
212 |
tgtttttaattaacgttggaacttggaaacgcatacatggtatgataatagtgccaatgatgaagatgttatactatgcaggtgaaagtagctttcggta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40056654 |
tgtttttaattaacgttggaacttggaaacgcatacatggtattataatagtgccaatgatgaagatgttatactatgcaggtgaaagtagctttcggta |
40056555 |
T |
|
| Q |
312 |
gaag |
315 |
Q |
| |
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|||| |
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| T |
40056554 |
gaag |
40056551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 1300056 - 1300096
Alignment:
| Q |
11 |
aatgaaatagacaaacacatcccttacttgttaacaccgtt |
51 |
Q |
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| T |
1300056 |
aatgaaatagacaaacacctcccttccttattaacaccgtt |
1300096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 39484422 - 39484694
Alignment:
| Q |
12 |
atgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcg |
111 |
Q |
| |
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|||||||| | |||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||| | ||| || |||||| ||| |
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| T |
39484422 |
atgaaatatataaacacatcccttatttattaacaccgttacttttccgttaattttcacagatattgatccatcttcctatctcgtc-tttcctcgtca |
39484520 |
T |
|
| Q |
112 |
tagttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgat-ttgtcgtcttttcacttaaaaatttgcattgcagaacaaag |
210 |
Q |
| |
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| ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| | || ||| ||||||||| ||| ||||||| || |||||| |
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| T |
39484521 |
ttgttattactatgctatcgctcatgtcatggctctcaccatcattcacattgttgatctcgttgtc-cttcacttaagaatatgcattgaaggacaaag |
39484619 |
T |
|
| Q |
211 |
ttgtttttaattaac-gttggaacttggaaacgcatacatggtatgataatagtgccaatgatgaagatgttatacta |
287 |
Q |
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|||||| ||| ||| ||||||| ||||||||||| ||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
39484620 |
ttgtttctaacgaacagttggaatttggaaacgcacacatggt---ataattgtgccaatgatgaagacgttatacta |
39484694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 35145661 - 35145922
Alignment:
| Q |
15 |
aaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcgtag |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| |||||| || || | | ||| | |
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| T |
35145661 |
aaatagacaaacacatcccttacttgttaacacagttacttttccgttaattttcacacatattgattcatcttcctcactcgtc-cctcatcgacgttg |
35145759 |
T |
|
| Q |
115 |
ttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgat-ttgtcgtcttttcacttaaaaatttgcattgcagaacaaagttg |
213 |
Q |
| |
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| ||||| | | |||||||||||||| | ||||||| || | ||||| |||||| | || || ||| |||||||||| ||||||| || ||||||||| |
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| T |
35145760 |
tcgttactctgccatcgctcatgtcattgatctcaccctcctacacatcgttgatctcttcatccttt-acttaaaaatatgcattgaaggacaaagttg |
35145858 |
T |
|
| Q |
214 |
tttttaattaac-gttggaac-ttggaaacgcatacatggtatgataatagtgccaatgatgaagat |
278 |
Q |
| |
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|||||||| ||| ||| ||| || |||| ||| |||||||||||||| |||||||||||||||| |
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| T |
35145859 |
tttttaatgaacaattgaaactttagaaaggcagacatggtatgataa---tgccaatgatgaagat |
35145922 |
T |
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