View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_49 (Length: 326)
Name: NF3114_low_49
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 34223352 - 34223046
Alignment:
| Q |
1 |
gaagcgtagcgatgaagtttcaaccgtacgaaattcgaaattatcacgcgaggttccgaggagtccgactttaccggcggagattcgccgttcgagtcca |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223352 |
gaagagtagtgatgaagtttcaaccgtacgaaattcaaaattatcacgcgaggttccgaggagtccgactttaccggcggagattcgccgttcgagtcca |
34223253 |
T |
|
| Q |
101 |
aggaagtcatcggagaatgttcgtgaaacgccggcgttagtggcgaggctgatgggactggaatcgcttccggcttcaccggagtcagttgtggagaaga |
200 |
Q |
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| T |
34223252 |
aggaagtcatcggagaatgttcgtgaaacgccggcgttagtggcgaggctgatgggactggaatcgcttccggcttcaccggagtcagttgtggagaaga |
34223153 |
T |
|
| Q |
201 |
gacagaagctgcttggagctttgcagagatgcgacgaggatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggtttcgtcacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223152 |
gacagaagctgcttggagctttgcagagatgcgacgaggatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggtttcgtcacc |
34223053 |
T |
|
| Q |
301 |
ttcgccg |
307 |
Q |
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||||||| |
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| T |
34223052 |
ttcgccg |
34223046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 55782414 - 55782346
Alignment:
| Q |
239 |
gatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggtttcgtcaccttcgccg |
307 |
Q |
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| T |
55782414 |
gatctcaaggtgctgaagtaaatcattgaatcagtgaggactcctgaaccagtttcgtcaccttcgccg |
55782346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 55846594 - 55846526
Alignment:
| Q |
239 |
gatctcaaggtgctgaagaaaatcattgaatcagtgaggactcctgaaccggtttcgtcaccttcgccg |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55846594 |
gatctcaaggtgctgaagtaaatcattgaatcagtgaggactcctgaaccagtttcgtcaccttcgccg |
55846526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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